Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0671 ATGGCTGGTGAAGGAGAAAATATTGAGCTTAAATTTCGTATATATGATGGAACTGATATAGCACAGAATTTCTATTCATCATCAACAACCATTGCTACCCTTAAGCAGAAGCTAATTGCTGAGTGGCCTCAAGGTAAAACAATTACACCAAAGGTAGTAAATGACCTAAAACTCATACATGCCGGTAAGATTTTGGAAAACAACAAAACTCTGGCTGATTCCAGAATAACATTTAGTGACATCCCTGGAGGTTTTGTTACCATGCATGTTGTAGTACAACCTCGAACCACCAAAAAGAAAACAGAAAAGAACCAAGAGGAGAAACAAAAGACAAATTCATGTTCATGCATCATTGTTTAG 360 0.3667 MAGEGENIELKFRIYDGTDIAQNFYSSSTTIATLKQKLIAEWPQGKTITPKVVNDLKLIHAGKILENNKTLADSRITFSDIPGGFVTMHVVVQPRTTKKKTEKNQEEKQKTNSCSCIIV* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0671 119 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 1 118 IPR040015 -
Vra3g0671 119 SUPERFAMILY Ubiquitin-like 4 98 IPR029071 -
Vra3g0671 119 CDD Ubl_MUBs_plant 8 95 - -
Vra3g0671 119 Pfam Ubiquitin-2 like Rad60 SUMO-like 6 116 IPR039540 -
Vra3g0671 119 PIRSF MUB 1 119 IPR017000 -
Vra3g0671 119 ProSiteProfiles Ubiquitin domain profile. 8 76 IPR000626 GO:0005515
Vra3g0671 119 Gene3D - 1 101 - -
Vra3g0671 119 PANTHER MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 1 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0671 Vra-Chr3 7214135 7214916 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0671 - - gmx:100818909 177.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0671 3 7214135 7214916 Vra3g0671 3 7214135 7214916 ECH