Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0661 ATGCCTCTGCATTTGAGCTATTTTTCTCCAGAAATCATGATAGGAATGGCTTTGAGAAACAGTGCCCACATTTCCTATTCAAGGGCTTTGTTTGCTGAGAGCTTCCACAGGCTGTTGTCTACTCAGACTGGAGGGAAGCTGCAAGACAAGGTTGCACTGATCACTGGGGCAGCTAGTGGAATAGGAAAGGCCACAGCCACCAAATTTATCAACAATGGAGCTAAGGTTATTATTGCTGATATTAATCAACAGCTTGGTGAGGAGACGGCAAAAGAACTAGGATCTAATGCCACTTTCATAACATGTGATGTTACTCAAGAGTCAGACGTATCCAATGCTGTTGAGTTTGCCATTTCTAAACACAAACAACTTGATATCATGTACAACAATGCAGGGGTAGCCTGCAAAAGTCCTCTAAGCATTGTTGACCTGGACATGGCCTTGTTTGACAAAATCATGGACATAAATGTTCGAGGTGCAGTGGCAGGTATCAAGCATGCAGCACGTGTGATGATCCCACGTGGAAGTGGGTCTATTCTCTGCACAGCAAGTGTCACAGGTGTTATGGGAGGTTTGGCTCAGCACACTTACTCAATATCTAAGTCTGCAGTCATCGGCATTGTTAAATCGCTGGCTTCTGAGCTATGCAGGCATGGAATCCGAGTCAATTGCATATCACCTTTTGCCATTCCAACACCTTTTGCTCTGGAAGAAATGAGTCAGATATATCCTCATGTTGATAGTCAGAGACATGTGGATATTATTCACAATGCCAGTGTTCTAAAGGGTGTCTATTGTGAACCCGATGATGTTGCTAATGCTGCACTTTTTCTTGCGTCCAATGATGCCAAGTATGTTAGTGGACACAACTTGGTTGTGGATGGAGGTTTCACATCTTTTAAGAATTTGGAATTTCCTGCACCAGATCAAGTGCAGTAG 939 0.4356 MPLHLSYFSPEIMIGMALRNSAHISYSRALFAESFHRLLSTQTGGKLQDKVALITGAASGIGKATATKFINNGAKVIIADINQQLGEETAKELGSNATFITCDVTQESDVSNAVEFAISKHKQLDIMYNNAGVACKSPLSIVDLDMALFDKIMDINVRGAVAGIKHAARVMIPRGSGSILCTASVTGVMGGLAQHTYSISKSAVIGIVKSLASELCRHGIRVNCISPFAIPTPFALEEMSQIYPHVDSQRHVDIIHNASVLKGVYCEPDDVANAALFLASNDAKYVSGHNLVVDGGFTSFKNLEFPAPDQVQ* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0661 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 122 133 IPR002347 -
Vra3g0661 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Vra3g0661 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Vra3g0661 312 Gene3D - 38 304 - -
Vra3g0661 312 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 24 305 - -
Vra3g0661 312 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Vra3g0661 312 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 48 298 IPR036291 -
Vra3g0661 312 PANTHER SECOISOLARICIRESINOL DEHYDROGENASE-LIKE 24 305 - -
Vra3g0661 312 Pfam Enoyl-(Acyl carrier protein) reductase 56 298 - -
Vra3g0661 312 PRINTS Glucose/ribitol dehydrogenase family signature 51 68 IPR002347 -
Vra3g0661 312 PRINTS Glucose/ribitol dehydrogenase family signature 122 133 IPR002347 -
Vra3g0661 312 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Vra3g0661 312 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Vra3g0661 312 PRINTS Glucose/ribitol dehydrogenase family signature 218 235 IPR002347 -
Vra3g0661 312 PRINTS Glucose/ribitol dehydrogenase family signature 261 281 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0661 Vra-Chr3 7120924 7123078 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0661 46 299 Miscellaneous Gene Families AT4G05530 30.502 7.93e-25 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0661 - - gmx:100814306 517.694