Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0655 ATGATGCTCAGACTTCGAAGCCGCGACGGCCTGGAGCGAGTAATCGTAGAAAACCCGCACACCACCACAGTGTCGGAGCTGAAGCGGATTATCGAAGCCCAATTGAGAATTCCGGTTCACAACCAAACCCTCTCCACCAACCAGAACCTTCTATTGGCGAAATCGCGTGAAGATCTCCATCGATTCACCGATATGGCCAACCCCGACCTCACTCTCTCGTCTCTCAACCTCGCCCACGGCTCAATCGTCTTTTTGACATACGAAGGCGAGCGCCACGTGGCGGGCCCCGCCTTCAACCCTGCGGGGTCCTTCGGCCGCAAGATGACCATGGACGACCTCATCGCCAAGCAGATGCGCGTCACGCGCCAGGAGAATCCGCACTGCGAGCTCGTCTCCTTCGACCGCGACTGCGCCAACGCCTTCCAGCATTACGTGAACGACACGCTGGCGTTCGCGGTCAAGCGCGGCGGCTTCATGTACGGCACTGTTTCCGAGGAGGGGAAGGTCGAGGTGGACTTCATCTACGAGCCGCCGCAGCAGGGTTCGGAAGAGAATCTCTTGTTTTTCAGAGACCCCGAAGAGGAGAAACTCGTGGAGGCTATTGCGGCGGGATTGGGGATGAGAAGGGTAGGGTTCATTTTCACGCAGACGATAAGCCAGGACAAGAAGGACTATACTTTGTCGAATAGGGAGGTGCTTCAGGCTGCGGAGTACCATGCTGAGAGTGGATTGAAAGAGTGGGTTACTGCGGTTGTTAAGCTTGAGGTGAATGATGATATGAGTGCGGATGTGCATTTTGAAGCGTTTCAGATTAGTGATGTGTGCGTGAGATTGTTCAAGGAAGGGTGGTTTGAGACTGAGATAAAGGAGGACGATGATCCCAAGTTGTCTAAGATGAAGAAGGATGTGGTTGTTGGGGTTAAGGATACCAAAGAAGTTGACAATGATTTCTTCTTGGTTGTCGTCAAAATCTCAGATCATCAGGGTCCTCTTTCTTCATCGTTTCCCATTGAGAACCGGAACACTCAGATGACTATGAAGGCTTTGAAGAATCATTTGGACAGGACAAAAAGTCTTCCATTTGTGAAGCGAATTTCTGATTTTCACCTTCTTCTTGTATTGGCAAGGGTTTTAGACTTGAATGCTGATGTCCCTGCATTGACGGCATGTGTGCACACACAGACTTCTATTCCAGAAGGTTACCAGATCCTTATTGAGTCTATGGCAAGTACCGCTTGA 1239 0.5117 MMLRLRSRDGLERVIVENPHTTTVSELKRIIEAQLRIPVHNQTLSTNQNLLLAKSREDLHRFTDMANPDLTLSSLNLAHGSIVFLTYEGERHVAGPAFNPAGSFGRKMTMDDLIAKQMRVTRQENPHCELVSFDRDCANAFQHYVNDTLAFAVKRGGFMYGTVSEEGKVEVDFIYEPPQQGSEENLLFFRDPEEEKLVEAIAAGLGMRRVGFIFTQTISQDKKDYTLSNREVLQAAEYHAESGLKEWVTAVVKLEVNDDMSADVHFEAFQISDVCVRLFKEGWFETEIKEDDDPKLSKMKKDVVVGVKDTKEVDNDFFLVVVKISDHQGPLSSSFPIENRNTQMTMKALKNHLDRTKSLPFVKRISDFHLLLVLARVLDLNADVPALTACVHTQTSIPEGYQILIESMASTA* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0655 412 SUPERFAMILY Ubiquitin-like 1 90 IPR029071 -
Vra3g0655 412 CDD Ubl_AtNPL4_like 1 86 - -
Vra3g0655 412 PANTHER NUCLEAR PROTEIN LOCALIZATION 4 2 91 IPR016563 GO:0006511
Vra3g0655 412 PANTHER NUCLEAR PROTEIN LOCALIZATION 4 102 410 IPR016563 GO:0006511
Vra3g0655 412 ProSiteProfiles MPN domain profile. 130 271 IPR037518 -
Vra3g0655 412 Pfam NPL4 family 157 283 IPR007717 -
Vra3g0655 412 ProSiteProfiles Ubiquitin domain profile. 1 85 IPR000626 GO:0005515
Vra3g0655 412 Gene3D - 1 101 - -
Vra3g0655 412 CDD MPN_NPL4 119 374 IPR007717 -
Vra3g0655 412 Pfam Nuclear pore localisation protein NPL4 1 85 IPR024682 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0655 K14015 - gmx:100811623 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0655 3 7071984 7075549 Vra3g0655 3 7071984 7075549 ECH