Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0646 ATGGCGGTTTCCGAAGAGGAATGCTCTTCAGCGAAGTCTGGTCCTTCTTCTTCTTCCTCCGCCTCGCGCTACTACCTCTCCAAATGCGTCCTCAGAGGAAGCGTCGTTCTTCAGGTCCTCTACGCTCACATTCGTTCTCCCTCCTCAGATGACATCATTTTCGGCAAGGAAACTTCTATTGAATTGGTGGTTATTGAGGATGATGGGAATGTGCAATCTGTGTGTGATCAGCCCGTCTTTGGCACCATCAAAGATCTTGCCATATTGCCTTGGAACGAGAAGTTTCGTGCACGTGATCCTCAGCTGTGGGGTAAAGACCTTTTGGTTGCCACATCCGATTCTGGGAAGCTGTCGTTGCTCACGTTTTGCAATGAAATGCACAGGTTTGTTTCTGTAACACATATACAGATGTCTATTCCTGGAAACCCATTGGATCTTCCTGGAAGAAGGTTAGCCGTTGATTCCAGTGGTTGTTTTATTGCTTCTAGTGCATACGAAGATCGGCTGGTTATGTTTTCTATGTCGATGTCCAGTGGTGATATCATTGATGAGAGAATTCTATATCCTTCGGAAAGTGAAGGAACTGCAAGTTCTTCCAGAAGCACCCAAAGAACCAGTATGCGTGGTACCATTTGGAGCATCTGCTTCATTTCACAAGATTCCAGACAACCAAGCAAAGAGTATAATCCTGTACTTGCAGTTATTATAAATAGGAGGGGATCCCTTCAAAATGAATTGCTATTATTGGAATGGAATGTTAAAGCACACAAAATATTTGTTATTTCTCAGTATGCTGAAGCTGGGCCTCTGGCATATGACATTGCTGAAGTTCCTAACTCTGGGGGACTTGCATTCCTGTTCAGGACTGGTGATGTTCTCTTAATGGATCTTAGAGATCCCCGCAATCCATTCTGTGTCTATAAGACTAACTTGAACATTTTGCCAAATGCCATGGAAGAGCAGACTTATGTGGATGACTCTTGTAAATTACACGATGTTGACGATGAACGGTTTAATGTTGCTGCCTGTGCTTTGTTGGAACTGAGCGATTATGATCCTATGTGCATAGACAGTGACAATGGTGGTGCTAATTCAGGCTACAAATACATATGCTCATGGAGTTGGGCACCTGAAAATAATAGAGATCCTAGGATGATCTTCTGTGTAGATACTGGGGAATTTTTTATGATTGAAGTTCTTTTTGATTCTGAAGGCCCTAAGGTTAATCTGTCTGAGTGTCTCTATAAAGGTCTGCCGTGTAAAGCACTTTTATGGGTTGAAGGTGGATATGTAGCTGCCCTTGTGGAAATGGGGGATGGTGTGGTCCTGAAATTGGAAGATGGAAGGCTATGCTATACAAACCCTATTCAAAACATTGCACCAATCTTGGATATGGCAGTTGTAGATTATCGTGATGAGAAGCATGATCAAATGTTTGCTTGCTGTGGTGTGGCTCCAGAGGGGTCATTAAGGATAATTCGAAATGGTATTAATGTGGAAAATCTACACAGGACTGCTTCTATATATCAAGGGGTAACTGGTACTTGGACTGTCAGAATGAAAATTACTGATTCACATCATTCTTTTCTAGTTCTATCGTTTGTTGAGGAAACCAGAATATTGTCAGTTGGGTTAAGTTTTACTGATGTGACTGATTCAGTTGGTTTCGAACCTGATGTCTGTACTCTGGCATGTGGCCTTGTGACTGATGGTGTACTTGTTCAGATCCACCGCTGTACTGTTAAGCTTTGTTTGCCCACTAAAGCTGCTCATTCCGAAGGTATCCCTTTGCCCTCTCCTATTTCCACATCTTGGTCTCCAGACAATGTGAGTATCAGTTTGGGGGCAGTTGGGCATAATTTCATAGTTGTGTCGACCTCTAACCCATGCTTTTTGTTTATCCTTGGGGTTAGATTGCTATCAGCTTATCAATATGAAATTTATGAAATGCAACATTTGGTACTGCAGAATGAATTATCATGCATTTCCATCCCTGGACAAGAAATTGAGCGAAAACCATCCAATTCATCCATTTCAGCAAATAATAGTAACATCTCTTCTTTCCAAAGTGGAGTGGACATCAGTAAAACCTTTGTTATTGGTACACACAGGCCGTCTGTGGAAATTTGGTTTTTTGCACCAGGTGGAGGAATTACAGTAGTGGCTTGTGGGACAATTTCATTGACTAATACAATAGGGACTGCCATCAGTGGTTGTGTACCTCAAGATGTACGACTTGTATTTGTTGATAAGTATTATGTTCTTGCTGGATTGAGGAATGGAATGCTCCTCCGCTTTGAGTGGCCGGTGGAACCATGTCCATCATCACCAATAAATATGGTGGATACTGCTTTATCTTCTATAAATTTGGTAAATTCTGCAAGTAATGTTTTAGGCAAGAGAAACGACCCTCCTTCAACACTTCAATTGATTGCCATTCGACGCATTGGCATTACTCCAGTTTTCTTGGTGCCACTAGGTGACACACTGGATGCTGATATAATTGCTCTTAGTGATAGGCCTTGGTTGTTGCATAGTGCAAGACACAGCCTTTCATATACTTCTATCTCATTTCAACCTTCCACACATGTGACTCCTGTTTGCTCTGTTGAGTGTCCAAAAGGAATATTGTTTGTTGCAGAAAACTGTTTACATCTGGTGGAGATGGTTCACAGCAAGAGACTTAATATGCAGAAGTTTCATTTAGAGGGCACTCCTAGGAAGGTCCTGTATCACGATGAAAGCAAAATGTTGCTAGTGATGAGGACTGAACTGAATTGTGGTACATGTCTGTCTGACATATGTTGTGTGGATCCCCTAAGTGGATCAGTAGTGTCGACTTTTAGACTTGAACATGGTGAAACAGGAAAATCCATGGAATTAATAAGAGTTGGAAGTGAGCAAGTGCTTGTTGTTGGAACTAGTTTGTCTTCTGGTCCAGCCATAATGCCCAGTGGTGAAGCTGAAAGTTGCAAGGGTCGTCTTCTTGTTCTTTGTCTTGTTCATGTGCAAAATTCAGATAGTGGTTCAATGACATTCTGTTCAAAGGGAGGGTCATCATCTCAAAAAACTTCGCCATTCCATGAAATTGTTTCATATGCTCCTGAACAGTTATCGAGCAGCAGCCTTGGCAGCAGTCCTGATGATAATAGTTCTGATGGCATCAAACTTGATGAAAATGAAGTATGGCAATTCCGATTGGCTTATGCAACAAAATGGCAAGGGGTGGTTTTTAAAATCTGTCCTTATCTTGATCGTTACTTCTTGGCATCTGCTGGAAATGCTTTCTATGTTTGTGGTTTCCCTAATGACAATCCTCAAAGAGTGAGAAGGTATGCTATGGGAAGGACGCACCACATGATAACATCTTTGAGTGCACATTTTACAAGAATTGCAGTTGGTGATTGTCGTGATGGAATCATATTATTTTCTTATCATGAGGAAGCTAGAAAATTGGAGCAACTTTGCTGTGATCCATCACGAAGGTTAGTTGCTGATTGCATTTTGATGGATGCTGATACAGCTGTTGTTTCGGATCGAAAAGGAGGCATTGCTATTTTATGTTCAAATCATTTGGAAGATAATGCGAGTACTGAATGCAACATGACACTAAGCTGTGCTTATTTCATGGCTGAGATTGCCTTGAGCGTACAGAAGGGCTCATATTCATACAGACTTCCAGCTGATGATGTTTTGCAAGGCGGCAATGGCCCCAAGACAAATGTTGATTCACTTCAAAATACTATTATTGCCAGTACCCTGTTAGGAAGCATAATGATCTTCATCCCTTTATCAAGGGAAGAATATGAGTTATTAGAAGCTGTGCAAGAAAGACTTGTTGTCCACCAGTTGACCGCACCTGTTCTAGGAAATGATCATAACGAGTTTCGCCGTCGTGAAATTCGGAAATCGGAACTGTTTTTTTACAAAGGCACGCAGAAATCGGAACATGCATATGCAGTTCTAAACAATATTTTTCGTCAACAATTGCGGGCCTGCCTCTCAAAATGTTGTCTGATATAG 4023 0.4161 MAVSEEECSSAKSGPSSSSSASRYYLSKCVLRGSVVLQVLYAHIRSPSSDDIIFGKETSIELVVIEDDGNVQSVCDQPVFGTIKDLAILPWNEKFRARDPQLWGKDLLVATSDSGKLSLLTFCNEMHRFVSVTHIQMSIPGNPLDLPGRRLAVDSSGCFIASSAYEDRLVMFSMSMSSGDIIDERILYPSESEGTASSSRSTQRTSMRGTIWSICFISQDSRQPSKEYNPVLAVIINRRGSLQNELLLLEWNVKAHKIFVISQYAEAGPLAYDIAEVPNSGGLAFLFRTGDVLLMDLRDPRNPFCVYKTNLNILPNAMEEQTYVDDSCKLHDVDDERFNVAACALLELSDYDPMCIDSDNGGANSGYKYICSWSWAPENNRDPRMIFCVDTGEFFMIEVLFDSEGPKVNLSECLYKGLPCKALLWVEGGYVAALVEMGDGVVLKLEDGRLCYTNPIQNIAPILDMAVVDYRDEKHDQMFACCGVAPEGSLRIIRNGINVENLHRTASIYQGVTGTWTVRMKITDSHHSFLVLSFVEETRILSVGLSFTDVTDSVGFEPDVCTLACGLVTDGVLVQIHRCTVKLCLPTKAAHSEGIPLPSPISTSWSPDNVSISLGAVGHNFIVVSTSNPCFLFILGVRLLSAYQYEIYEMQHLVLQNELSCISIPGQEIERKPSNSSISANNSNISSFQSGVDISKTFVIGTHRPSVEIWFFAPGGGITVVACGTISLTNTIGTAISGCVPQDVRLVFVDKYYVLAGLRNGMLLRFEWPVEPCPSSPINMVDTALSSINLVNSASNVLGKRNDPPSTLQLIAIRRIGITPVFLVPLGDTLDADIIALSDRPWLLHSARHSLSYTSISFQPSTHVTPVCSVECPKGILFVAENCLHLVEMVHSKRLNMQKFHLEGTPRKVLYHDESKMLLVMRTELNCGTCLSDICCVDPLSGSVVSTFRLEHGETGKSMELIRVGSEQVLVVGTSLSSGPAIMPSGEAESCKGRLLVLCLVHVQNSDSGSMTFCSKGGSSSQKTSPFHEIVSYAPEQLSSSSLGSSPDDNSSDGIKLDENEVWQFRLAYATKWQGVVFKICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRYAMGRTHHMITSLSAHFTRIAVGDCRDGIILFSYHEEARKLEQLCCDPSRRLVADCILMDADTAVVSDRKGGIAILCSNHLEDNASTECNMTLSCAYFMAEIALSVQKGSYSYRLPADDVLQGGNGPKTNVDSLQNTIIASTLLGSIMIFIPLSREEYELLEAVQERLVVHQLTAPVLGNDHNEFRRREIRKSELFFYKGTQKSEHAYAVLNNIFRQQLRACLSKCCLI* 1341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0646 1340 Gene3D - 35 457 IPR015943 GO:0005515
Vra3g0646 1340 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR (CPSF) A SUBUNIT PROTEIN 19 1303 - -
Vra3g0646 1340 Gene3D - 497 894 IPR015943 GO:0005515
Vra3g0646 1340 Pfam CPSF A subunit region 1064 1300 IPR004871 GO:0003676|GO:0005634
Vra3g0646 1340 MobiDBLite consensus disorder prediction 1 21 - -
Vra3g0646 1340 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 106 664 IPR018846 -
Vra3g0646 1340 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 19 1303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0646 Vra-Chr3 6993711 7006467 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0646 K12830 - gmx:100806799 2350.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0646 3 6993711 7006467 Vra3g0646 3 6993711 7006467 ECH