Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0643 ATGCGAAGAGCCCGAAATATGAGACCGAACATAGTTTCTGAGGCAGGGTTGCCTACTAGGATGAATCAATGGTGGGAAAGCATTCCATTTCTCACTTCTGCAGTGGTGGTTGTCTGTGGAGTCATTTACTTGGTCTGTCTTTTGGTTGGATACGATTCCTTTGCTGAGGTTTGCTTCTTGCCATCTGCTGTTGTGTCACGGTTTCAAGTTTACAGGATTTATACTTCCATTATCTTCCATGGTTCACTGCTTCACGTTCTCTTCAACATGATGGCTTTAGTTCCCTTGGGGTCTGAGCTGGAGAGGATCATGGGCTCAGTTCGCTTGCTATATGTTATTATTTTGTTGGCTACTAGCAATGCCATATTCCACGTGCTCATAGCACTGGTGGTGGCACACAATCCTGTTCTTACATATGATTACCTCATGAATGAGTGTGCCATAGGCTTCTCAGGAGTTCTATTTTCAATGATTGTTATAGAGACAAGCTTGAGTGGAGTTCAATCCAGGAGTGTTTTTGGATTGTTTAATGTGCCTGCCAAGTGGTATGCATTCTTTTTGTTGGTAGTATTCCAGCTTCTCATGCAAAATGTTTCACTACTTGGGCACCTTTGTGGCATTTTATCTGGGTTTGCATATACATATGGATTGTTTAATTTCCTCATACCCGGAACCACATTTTATTCTTCTATTGAATCCTCGTCCTGGCTTTCAACATGTGTGAGACGTCCAAAATTTATTGTTTGCACGGGTGGAAATCCTTCGGGTTATATTCCTACACATACAAACCAAAATTCAACAAGTGGTGGCTTGCTTTCTGGAAATATTTGGAGGAACCTGTCTTCATTGATGCCTCAAAGGGAAGTGTCTACTCAGTCAACTGAGGACAGTAGGTTCCCTGGGAGGGGAAGGACCCTTGGTTCTAGTCAAGATCAAGCTCCTTCTCATCTTCATTCAGATTCAAATCTTCAAGAAAGACTTTTGGAGGATAGTAGTCCCAATAATCCTTTAGTTTCATCCACTCCTAGTAACACTCATCAGTTACCAGAAGGAAGGCGTTCAGCTGTTAATGTAGCTACAACGACTGCTGTTCCACAGCATCAGGGTGCAGTCGTTTCGGAAGAAGGGATTAAAAAACTCGTATCAATGGGCTTTGACAGGACGCAAGTGGAAGTGGCGCTTGCAGCTGCTGATGGTAATATCAATGTTGCAGTGGAAATACTCATGAGCCAGCAGAGTTGA 1242 0.4308 MRRARNMRPNIVSEAGLPTRMNQWWESIPFLTSAVVVVCGVIYLVCLLVGYDSFAEVCFLPSAVVSRFQVYRIYTSIIFHGSLLHVLFNMMALVPLGSELERIMGSVRLLYVIILLATSNAIFHVLIALVVAHNPVLTYDYLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFFLLVVFQLLMQNVSLLGHLCGILSGFAYTYGLFNFLIPGTTFYSSIESSSWLSTCVRRPKFIVCTGGNPSGYIPTHTNQNSTSGGLLSGNIWRNLSSLMPQREVSTQSTEDSRFPGRGRTLGSSQDQAPSHLHSDSNLQERLLEDSSPNNPLVSSTPSNTHQLPEGRRSAVNVATTTAVPQHQGAVVSEEGIKKLVSMGFDRTQVEVALAAADGNINVAVEILMSQQS* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0643 413 Gene3D - 347 413 - -
Vra3g0643 413 CDD UBA_At3g58460_like 374 409 - -
Vra3g0643 413 PANTHER RHOMBOID-LIKE PROTEIN 15 10 412 - -
Vra3g0643 413 SMART uba_6 373 410 IPR015940 -
Vra3g0643 413 MobiDBLite consensus disorder prediction 285 354 - -
Vra3g0643 413 SUPERFAMILY Rhomboid-like 26 220 IPR035952 -
Vra3g0643 413 SUPERFAMILY UBA-like 366 412 IPR009060 GO:0005515
Vra3g0643 413 Pfam UBA/TS-N domain 374 408 IPR015940 -
Vra3g0643 413 Gene3D - 22 219 IPR035952 -
Vra3g0643 413 Pfam Rhomboid family 66 219 IPR022764 GO:0004252|GO:0016021
Vra3g0643 413 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 371 411 IPR015940 -
Vra3g0643 413 PANTHER DER1-LIKE PROTEIN, DERLIN 10 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0643 Vra-Chr3 6969224 6977636 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0643 - - gmx:100805745 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0643 3 6969224 6977636 Vra3g0643 3 6969224 6977636 ECH