Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0624 ATGGATTCTTCTTCCATCTATGGCGTCTCCCACTTACTCACCTTCTTCCTTCTCTTCCTTTTACAGCTATCTTCACTCTCCGCATTCCCTCACAATTCTTCAACCACTCCTCAGATTAACTCCAACTCCATCCTCGTCGCGCTTCTCGATTCCCATTACACCGAACTCGCCGAGCTCGTCGAGAAAGCACTTCTTCTCCAGCAACTTGAAGACGCCGTCGGCAACCACAACATCACCATCTTCGCCCCGCGAAACAAGGCCCTCGAACGCGACCTCGACCCCGAGTTCAAGCGCTTCCTCCTCGAGCCTCGCAATCTTCGCTCCCTTCAGACACTCCTCATGTCCCACATTCTCCCCACGCGAATCTCCTCTCGCCACTGGCCCAACTCCGATCGCCATCACGCCACTCTCGGAAACCACCACCACCTGCATTTAGCCACAAAGCCCTCCGGCCAGATGACCGTCGACGCCGCCGAGATCCTCCGCGCCGACGACGTTGTCCGCCCCGACGGAGTTATCCACGGCATCGAGCGTCTCATAGTCCCCCGATCCGTCCAGGAGGACTTCAACCGCCGCCGCAACCTCGCCGCCATCTCCGCCGTCCTCCCGGAGGGCGCTCCGGAGATCGATCCCCGCACCCACCGCCTCAAGAAGCCCGCCCCAGTCCCCGCCGGCGCCCCTCCCGTTCTCCCAATCTACGACGCCTTGGCGCCAGGACCTTCCATCGCTCCCGCACCGGCGCCGGGACCCGGAGGCCCGAAGCATCACTTCAATGGCGAGCGGCAGGTGAACGACTTCATCCACACGCTCTTGCATTACGGAGGGTACAACGAAATGGCCGATATTCTCGTTAACCTAACGTCTCTGGCCACCGAAATGGGAAGGCTCGTTTCAGAGGGTTACGTCCTTACCGTTTTGGCCCCTAACGACGAAGCCATGGCGAAGTTGACGACGGATCAGTTGAGCGAACCGGGCGCACCGGAGCAGATTATGTACTATCACATTGTTCCCGAGTACCAAACCGAAGAGAGTATGTATAATGCCGTCAGAAGGTTCGGTAAGGTCAGCTACGATACCCTGCGCTTACCCCACAAGGTTCTCGCTCAGGAGTCTGACGGTTCCGTTAAATTCGGTCACGGCGATTCCTCCGCATACTTGTTCGATCCTGATATTTACACCGATGGAAGGATCTCCGTCCAGGGAATCGACGGCGTTCTCATCCCCCCGGAGGAAGAGGAAGAACGCACCCACCGCACCACCCCACTTGTCAAGGTTGCCGCTAAACCAAGAAGAGGGAAGTTGATGGAAATGGCATGTAGCATGCTCGGAGCTTTTGGACAAGTATGCCAATGA 1353 0.5772 MDSSSIYGVSHLLTFFLLFLLQLSSLSAFPHNSSTTPQINSNSILVALLDSHYTELAELVEKALLLQQLEDAVGNHNITIFAPRNKALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPTRISSRHWPNSDRHHATLGNHHHLHLATKPSGQMTVDAAEILRADDVVRPDGVIHGIERLIVPRSVQEDFNRRRNLAAISAVLPEGAPEIDPRTHRLKKPAPVPAGAPPVLPIYDALAPGPSIAPAPAPGPGGPKHHFNGERQVNDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIVPEYQTEESMYNAVRRFGKVSYDTLRLPHKVLAQESDGSVKFGHGDSSAYLFDPDIYTDGRISVQGIDGVLIPPEEEEERTHRTTPLVKVAAKPRRGKLMEMACSMLGAFGQVCQ* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0624 450 SMART fasc_3 79 183 IPR000782 -
Vra3g0624 450 SMART fasc_3 304 409 IPR000782 -
Vra3g0624 450 Gene3D FAS1 domain 282 409 IPR036378 -
Vra3g0624 450 SUPERFAMILY FAS1 domain 242 410 IPR036378 -
Vra3g0624 450 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 448 IPR044654 -
Vra3g0624 450 Gene3D FAS1 domain 44 182 IPR036378 -
Vra3g0624 450 SUPERFAMILY FAS1 domain 35 183 IPR036378 -
Vra3g0624 450 ProSiteProfiles FAS1/BIgH3 domain profile. 263 406 IPR000782 -
Vra3g0624 450 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 1 448 - -
Vra3g0624 450 Pfam Fasciclin domain 298 408 IPR000782 -
Vra3g0624 450 Pfam Fasciclin domain 52 182 IPR000782 -
Vra3g0624 450 ProSiteProfiles FAS1/BIgH3 domain profile. 40 180 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0624 Vra-Chr3 6827373 6830294 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0624 - - gmx:100818575 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0624 3 6827373 6830294 Vra3g0624 3 6827373 6830294 ECH