Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0619 ATGACCCGTTTTTCCGAGAGGCTCCGTTTGCGCTGGTTGTTTCCGAAACCGACCCGTTTTCTCGCTCTTGTTTCTCTCTCCACTCTCCATCATCTCTGCAAGTCCCTCGTTGGCTTCCTACTCTCCCAAACCCTACCCTTCCTCGCTATGGATAACTTCTTCTCCGACTACCTCCCCGACGACTTCGATTCCTCCCCCTACCGTCCCCACCGCCGCTTCCTCCTAGACCACGACCTTGATTTAGCCCGCGAGAGGGTCTACCTCCTCCCCCACAGGTGGCTGGTGGAATTGGAAGGTGAAGCTGATCGAAGAGAGGGTGTGCTTTATACGGTGACGTGTAATTCCGATTCCGACTCCGAGATTTCGCTTCATCTGAGGAAGGAGGAGGAGCGCCACAAGATTGGGGTTTCTGGTCGTCAGTATGCGTTGGTTCCCGAGGGAGTTTGGTTGCGAACACTCAAACGGTATAACGATTCTAATAGTGAAGTGAAAGATTTAGGAAGCCTCTCAAATGCAGAGGATTGTTTGCCAGAATTGTTCCCCTTGCAAGTTAAGATATTTTTTTCACTGGAAACCAGTTCACTGGAAGCAAAAATAAGCCTAAAGGAAAATGTTGCTGACTTCTATGAGAAAGCATGTGATATTTTCAATTCTGCATATAACCCCGTGCATATTTGGGACTTCTCAGGGCAGACGACCCAGTTTTTCTTGAATGGCAAATCAGGATTGCCACATGATTCTTCTGGTCAATCTGTAAAAGAGGTTACTTTGGAGTTACAAGTACACGGGCTTCCAGATTCTATGAGAGGTAATGGGGGCAATGAGATGATTTTAGATAGGTCTCAGATGGAATGTTCACACAGTGGTTCCGTTACAATGAATGGAAGCACTGACTATGTACCCCCCTGCATAACAGCCAACTATTTTCGAGGTAGTAGTTGTAGAGCAATTCAATCTTTGGGCTTGACAGGATTACAGAATCTTGGAAATACGTGTTTTATGAATAGTGCCATTCAGTGTTTGGCTCACACCCCAAAGCTTGTTGATTTTTTCCTTGGAGATTACCATAAAGAGATTAATTATGAAAATCCATTGGGGATGAATGGAGAACTAGCCCTAGCTTTTGGAGACTTGCTTAGAAAGCTGTGGGTTCCCAGAGCTATGCCCATTGCACCGAGAATGTTCAAGATGAAACTAGCTAATTTTGCTCCTCAGTTTAGTGGTTATAGCCAGCATGACTCTCAAGAGCTTCTTGCTTTTTTGTTGGATGGGCTGCATGAAGACCTTAATCGAGTGAAACGCAAGCCATATCATGAAGTTAAGGATGCAGATGGTCGTCCAGATGAAGAGGTGGCAGAAGAGTATTGGCGAAATCACCTTGCTCGCAATGACTCCATAGTAGTTGATTTGTGCCAAGGCCAGTTTCGGTCAACGCTAGTTTGCCCTATTTGCAAGAAGGTTTCTATCACATTTGACCCTTTTATGTATCTATCTCTGCCTTTACCTTCTACAACGATACGGACCATGACTTTGACGGTCATAAGCACTGACGGGATTACATTGCCTTCTACACTTACGGTAACAGTACCTAAATGTGGAACACTGAAGGATCTTATTGGGGCTTTAAGTACTTCTTGTTCTCTGAGAGAAGATGAAACCCTCTTGGTGGCTGAGATATACAAGAATAAAATTTTTCGAGTATTCGAGAATCCTTCTGAATCATTAGGTGAAATTAGAGATCAAGATAAAGTTGTTGCTTATCGAATGCAGAAGGATACTGAAACTACTCCCTTGGTTGCTTTTGTCCATGAACGTTCTGTGGAAACTTTTGAGAAGGAAAGGTTGTTTGGTATTCCCCTTGTAACAAGGTTGTCCAATATTTCTTGTGGATATGATGTTCAAAGGGAGTTTCTGAAGATAATCAATCCATTTATGATGCGCGCTAAAGATGTATCGGATGATTGTGAAAATAATGAAGGTATTAATAAAAGACCAAGTGAAGATGATGAATTGGGGGATACTACTAATTCCTGCGCAATAGGAAATGATACAGACTCAATCATTGGAACAGATGATGGCATACCTTTGTCGACTGACTTTGAATTCTACTTACATGGAATGGAGAATGGTAAGATAATATTGGACAAACCATTAACAGTGACAACATTTCCCAGAAAGGAGCCTCCAGTAGTTGTCGTACAATGGTCGGATAAGATGCTTAAAATGTATAATACATCTCTGCTTGACTCATTGCCCGAGGTTTTCAAGTCCCAGCAATTCACCAAGAGAATACAAGAATCAGTTTCTATTTACAAGTGTCTTGAAGCCTTCTTGAAAGAAGAACCTCTTGGGCCAGAAGACATGTGGTACTGTCCTAACTGCAAAAAACCTCAGCAAGCAACTAAAAAACTAGATCTTTGGAGATTGCCTGAGATCCTTGTTGTTCATTTGAAGAGGTTCTCGTACAGCCGATACTTGAAGAACAAGCTGGAAACATTTGTTGATTTTCCAATTAATAATCTGGACTTATCAACATATGTAGCATATGGGAATAGTCAGTCTACCAATCGCTATGTGTTATACGCTATTAGTTGTCATTATGGAGGGTTAGGAGGAGGTCACTATACAGCATTTGTCCGATATGGCAATGATAAATGGTATGATTTTGATGACAGCAGAGTCGAACCTGTTAATGAGGACACGATAAAGACTCCTGCTGCTTATGTTCTTTTCTACAGGAAAGTTTAG 2748 0.4239 MTRFSERLRLRWLFPKPTRFLALVSLSTLHHLCKSLVGFLLSQTLPFLAMDNFFSDYLPDDFDSSPYRPHRRFLLDHDLDLARERVYLLPHRWLVELEGEADRREGVLYTVTCNSDSDSEISLHLRKEEERHKIGVSGRQYALVPEGVWLRTLKRYNDSNSEVKDLGSLSNAEDCLPELFPLQVKIFFSLETSSLEAKISLKENVADFYEKACDIFNSAYNPVHIWDFSGQTTQFFLNGKSGLPHDSSGQSVKEVTLELQVHGLPDSMRGNGGNEMILDRSQMECSHSGSVTMNGSTDYVPPCITANYFRGSSCRAIQSLGLTGLQNLGNTCFMNSAIQCLAHTPKLVDFFLGDYHKEINYENPLGMNGELALAFGDLLRKLWVPRAMPIAPRMFKMKLANFAPQFSGYSQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDEEVAEEYWRNHLARNDSIVVDLCQGQFRSTLVCPICKKVSITFDPFMYLSLPLPSTTIRTMTLTVISTDGITLPSTLTVTVPKCGTLKDLIGALSTSCSLREDETLLVAEIYKNKIFRVFENPSESLGEIRDQDKVVAYRMQKDTETTPLVAFVHERSVETFEKERLFGIPLVTRLSNISCGYDVQREFLKIINPFMMRAKDVSDDCENNEGINKRPSEDDELGDTTNSCAIGNDTDSIIGTDDGIPLSTDFEFYLHGMENGKIILDKPLTVTTFPRKEPPVVVVQWSDKMLKMYNTSLLDSLPEVFKSQQFTKRIQESVSIYKCLEAFLKEEPLGPEDMWYCPNCKKPQQATKKLDLWRLPEILVVHLKRFSYSRYLKNKLETFVDFPINNLDLSTYVAYGNSQSTNRYVLYAISCHYGGLGGGHYTAFVRYGNDKWYDFDDSRVEPVNEDTIKTPAAYVLFYRKV* 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0619 915 MobiDBLite consensus disorder prediction 656 675 - -
Vra3g0619 915 Pfam Ubiquitin carboxyl-terminal hydrolase 323 912 IPR001394 GO:0004843|GO:0016579
Vra3g0619 915 CDD Peptidase_C19R 750 913 - -
Vra3g0619 915 Gene3D Cysteine proteinases 734 915 - -
Vra3g0619 915 Gene3D Cysteine proteinases 311 552 - -
Vra3g0619 915 MobiDBLite consensus disorder prediction 656 671 - -
Vra3g0619 915 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 323 915 IPR028889 -
Vra3g0619 915 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 49 915 - -
Vra3g0619 915 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 324 339 IPR018200 GO:0004843|GO:0006511
Vra3g0619 915 SUPERFAMILY Cysteine proteinases 321 914 IPR038765 -
Vra3g0619 915 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 858 875 IPR018200 GO:0004843|GO:0006511
Vra3g0619 915 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 49 915 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0619 Vra-Chr3 6782619 6790631 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0619 769 915 Miscellaneous Gene Families AT4G31670 34.667 1.70e-18 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0619 - K21343 gmx:100791802 1466.44