Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0610 ATGGCGACGATGGATCCGCTGATGACGCCGTTGGGGCAAATGCTATTGGAGGAGATCACTCCGGTGGTGATGCTCATTTCAACTGCTTCTGTCGAAGAAGCTTCCCGCAAGAACGGCCTCTCCTTCCTCCAGATGCTAACGCCGTTCTGCTCCTTCGACAACATCGACGTGCCTGTTAGGACTGCCAGTGACCAACCCTATCGCCTTCACAAGTTCAAATTGCGCTTGTTCTACGCTTCCGATGTTAGGAGGCCTGATTTGAAGGAAGCTAAAGAGCAATTGAAGCAAGTTATCTCGGAGGCTGGGGAGAAAGAGTTTCCTGACTCGAATTCAGATTTGCCGGAAATTAATCGTGAACTTTCCTCGAGTTCTGAATACGAAAATACACCATCCTGGTTCCGGTTTCTCAATAAAGAGCTTGTTCGTGTGGCTTCCTTTTCAGACCATGAAGCTTTTGACCATCCCGTGATATGTCTTCTTGCTGTCTCTTCTAAGGATGAGCAACCTATTAACAGATTTGTTGACTTTTTTAATACCAATAAGCTTCCTTCCCTTCTTAATGATGGAGCAATGGATCCAAAAATTTCAAAGCATTACTTGTTGGTTCATGATAATCAAGATGGTCCTGCAGACAGAGCAAGTAAAATATTGACAGATATGAGGAGTACATTTGGTACTGGCGATTGTTCTTTGCTTTGTATTAATTCTTCCCAGGAGGCTCCATTCAAACATCAAGATAATCCTTGGGCTTCCTATATATCTGATTCCTCATCTAGTTCCACTCAAGATGTTGGTTGCTTTCTTAACATGGACGATATTGATGAGATTAAAGTTCTAATGCAAGATTTATCATCTAAGCGCATAATTCCAAATATGGAGCAAACAATTCGTATACTCAACCAACAGGTTTCTGCAACACGGAAAGGGTTTAGAAACCAAATAAAAAATTTATGGTGGAGAAAAGGGAAAGAAGACGGTGCAGATTCTCTCAATGGTCCTGCGTATAACTTTAATTCCATCGAATCCCAGATTCGAGTTTTGGGTGATTATGCTTTCATGTTACGAGATTATGAACTTGCCTTGTCAAATTATCGCCTAATTTCGACAGATTACAAGATTGATAAAGCCTGGAAGCGCTATGCTGGTGTGCAGGAAATGATGGGGCTTACTTACTTCATATTGGATCAATCAAGAAAGGAAGCTGAGTATTGCATGGAAAACGCATTTAACACATATTTAAAGCTTGGATCATTGGGTCAGCTAAATGCAACGCGATGTGGCTTGTGGTGGATAGAAATGTTAAAGGCACGTGATCAATATAAAGAGGCAGCTACTGTTTATTTTCGTATTTGTGGTGAGGATATCCTACATTCTGCTGTGATGCTTGAACAAGCATCATACTGCTACTTGTTGTCTAAACCCTCCATGTTACGCAAATATGGATTTCATCTAGTGCTTTCTGGTGAGCAGTATAAAAAGTGTGATCAGATTAAACATGCAATTCGAACCTACCGATGTGCACTTTCTGTTTTTAAAGGAACTACTTGGAGTTATATCAATGATCATGTTCATTTCCATATAGGACAGTGGTATGCTTCCCTTGGGATGTATGACGTGGCTGTCAAGCATATGACGGAAATTTTGTGCTGTAGCCACCAGTCCAAGACAACACAGGAATTATTCCTAGGCGACTTTCTTCATATTGTGGAGAAAACTGGACGAACATTTGAGGTAACAAAGCTTCAATTGCCTGTAATCAACATCTCTACACTCAGGGTAATCTATGAAGATCACCGGACCTTTGGATCCCCTTCATCTGCTAACATTAGAGAAGCCTTGTGGCATTCTTTGGAGGAGGAAATGCTGCCATCATTCTCTGCTGCCAAGACTAATTGGTTGGAGTTGCAATCAAAGCTTATATTAAAAAAGCACAGTCAAAATGTTTGTGTTGCAGGCGAAGCTGTGAAGGTGACTATTGAATTTAAAAATCCTCTGCAAATCTCAATTCCCATATCTAGTGTTACACTTGTATGCAAGTATTCTGCCAGTACTGATGAAGTGATATCAAATGAAAATGAGTCAAGTATGGAGAAAGATAATAAGGTCGGCCACTTTAGAAATATGAGCTCCGACAATTCCTCATTTATGGTGTCTGAGGTTGATTTCTTACTAGGAGGTGGTGAAACAACCATGATCCAACTATCAGCTACTCCCAGGGAAGAGGGCACTCTTGAAATTATTGGTGTCAGGTGGAAACTGTCTGGGACAATTGTGGGCTTTTACAACTTTGAGTTGGGTCTACCAAAGAAGAATATTTCAAAAAGAAGGAAAACAAAGCACCTTCCAAACGAGAAATTTAAATTTATGGTGATTAAGAGCATACCGAAGCTTCAGGGTTCCATCCACCCTTTACCTGGAAAGGCACATGCTGGAGATTTACGGCAGCTTGTTTTGGAATTGAGGAATCCATCGGAGTTTCCTGTTAAGAATCTGAAGATGAAGATAAGTCATCCTAGGTTCCTTATAATTGGGAAGCAGGAAAATATGATGTCGGAGTTTCCTGCGTGTTTAAGAAAGAAAACAGATTCAGTACAAAGTGTTATGCATGATAATCCTAATATCACTACTGACACAGTTTTTTTGTTTCCAGAGGGTACATCAGTTCAAGGTGACACACCCTTCTTGTGGCCTCTTTGGTTTAGGGCTGCTGTTCCAGGTGATATATCTCTTTGCATGAGCATATATTATGAGATAGGAGATGTATCAAGTGTCATCAAGTATCGCACTCTTCGCTTGCATTACAATGTGCAGGTGTTACCATCATTGGATGTCTCATTTCAAATCTGTCCTTTCCGATCAAGATTGGAAGAATTTCTTGTTCGATTGGATGTTGTTAATAAGACTAGCTCAGAAAGTTTCCAAGTTTGTCAGTTGTCATCAGTTGGTCATCAATGGGAAATCTCATTAGTTGAAGCTCCGGATAGTATTTTTCCTTTACAATCACTGATGGCTGGTCAAGCAATATCATGTTTCTTTACACTAAAGAAATCAAGGAGGCTTTTGACATTTGGGGATGACGTGTCTACATCCCCTGTCAAAAGTGATGCAATATTGGTACCCCAAAGCATAAAGGATATAGTTTATGACGTAAACAGTGCACCTTTGGTCAATTTCCACCATTACGAAAGATTGCAGCAGGAAGTTTCATACAAGGGTGACTTAAATACTGTGGATTTTGTGTTAATCTATCGGCCATTTAGGAGTAGCGACGATCCTGGTTTCTCCACTTCGTCTGTAATGTCCCATCACGCGTGCCACTTCAGTACTGCTAGCACGGGTCCCATTTCATGGCTAGTGGATGGACCTCAAACCATGCATCATGACTTCTCTGCATCATTCTGTGAAATAAATATGAAGATGCATATTCACAATTCATCTGGTGCCACTACTTTTGTACGCATTGACACCTTAGATTCAGATGGTAATAGTGAACAGATAAACAGTGTAAATGTGGTTCAATCTGCAACTACCGATAACCAAGCAGGATGGCACGATATCGCCCCAGTGAATGAACTCAAAGTCGCCTCAAATGCTCTTGAAACCCAACCAGGAAAAGCACTATCATTGGAAAGTGCCTCCTCATATATTTGGTCTGGATCAAGTTCAACCCATCTCCACATTGAGGCTATGTCCTCGGTAGAAATTCCTCTTCAGATCTGTGTATTCTCTCCTGGGACGTATGACCTGTCAAATTACGTTTTGAATTGGAAACTTCCATCCAATGGACAGGGAGATAGTGATGAAAAGAGGCAGCAATCAGGCCAGTGCCAGGGGTATAAATACTATCTTACCGTGCTCCAGTCCACTTGA 3870 0.4114 MATMDPLMTPLGQMLLEEITPVVMLISTASVEEASRKNGLSFLQMLTPFCSFDNIDVPVRTASDQPYRLHKFKLRLFYASDVRRPDLKEAKEQLKQVISEAGEKEFPDSNSDLPEINRELSSSSEYENTPSWFRFLNKELVRVASFSDHEAFDHPVICLLAVSSKDEQPINRFVDFFNTNKLPSLLNDGAMDPKISKHYLLVHDNQDGPADRASKILTDMRSTFGTGDCSLLCINSSQEAPFKHQDNPWASYISDSSSSSTQDVGCFLNMDDIDEIKVLMQDLSSKRIIPNMEQTIRILNQQVSATRKGFRNQIKNLWWRKGKEDGADSLNGPAYNFNSIESQIRVLGDYAFMLRDYELALSNYRLISTDYKIDKAWKRYAGVQEMMGLTYFILDQSRKEAEYCMENAFNTYLKLGSLGQLNATRCGLWWIEMLKARDQYKEAATVYFRICGEDILHSAVMLEQASYCYLLSKPSMLRKYGFHLVLSGEQYKKCDQIKHAIRTYRCALSVFKGTTWSYINDHVHFHIGQWYASLGMYDVAVKHMTEILCCSHQSKTTQELFLGDFLHIVEKTGRTFEVTKLQLPVINISTLRVIYEDHRTFGSPSSANIREALWHSLEEEMLPSFSAAKTNWLELQSKLILKKHSQNVCVAGEAVKVTIEFKNPLQISIPISSVTLVCKYSASTDEVISNENESSMEKDNKVGHFRNMSSDNSSFMVSEVDFLLGGGETTMIQLSATPREEGTLEIIGVRWKLSGTIVGFYNFELGLPKKNISKRRKTKHLPNEKFKFMVIKSIPKLQGSIHPLPGKAHAGDLRQLVLELRNPSEFPVKNLKMKISHPRFLIIGKQENMMSEFPACLRKKTDSVQSVMHDNPNITTDTVFLFPEGTSVQGDTPFLWPLWFRAAVPGDISLCMSIYYEIGDVSSVIKYRTLRLHYNVQVLPSLDVSFQICPFRSRLEEFLVRLDVVNKTSSESFQVCQLSSVGHQWEISLVEAPDSIFPLQSLMAGQAISCFFTLKKSRRLLTFGDDVSTSPVKSDAILVPQSIKDIVYDVNSAPLVNFHHYERLQQEVSYKGDLNTVDFVLIYRPFRSSDDPGFSTSSVMSHHACHFSTASTGPISWLVDGPQTMHHDFSASFCEINMKMHIHNSSGATTFVRIDTLDSDGNSEQINSVNVVQSATTDNQAGWHDIAPVNELKVASNALETQPGKALSLESASSYIWSGSSSTHLHIEAMSSVEIPLQICVFSPGTYDLSNYVLNWKLPSNGQGDSDEKRQQSGQCQGYKYYLTVLQST* 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0610 1289 Gene3D Tetratricopeptide repeat domain 326 558 IPR011990 GO:0005515
Vra3g0610 1289 Pfam Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit 643 829 IPR013935 -
Vra3g0610 1289 Pfam ER-Golgi trafficking TRAPP I complex 85 kDa subunit 191 524 IPR024420 -
Vra3g0610 1289 PANTHER TRANSPORT PROTEIN TRAPP 10 1288 IPR024420 -
Vra3g0610 1289 SUPERFAMILY TPR-like 435 556 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0610 K20305 - gmx:100809666 2251.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0610 3 6684231 6703078 Vra3g0610 3 6684231 6703078 ECH