Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0593 ATGGAAGACACCAAATCCAAGTTCAAGAGGATTTGCGTCTTCTGTGGCAGCAGTTCAGGAAAAAAACCTACCTATCAAGAAGCTGCCGTTCAACTTGGCAGGGAGCTGGTGGAAAGAAGAATTGATTTGGTGTATGGAGGTGGCAGCGTGGGGCTGATGGGTCTCGTTTCTCAGGCTGTTCATGATGGTGGGCGCCATGTTCTAGGGGTTATCCCAACAAGTCTTATGCCAAGAGAGATAACAGGTGAACCTATTGGCGAAGTGAGAGCCGTATCTAATATGCACCAAAGGAAAGCTGAGATGGCTCGTCAAGCCGATGCCTTCATTGCCCTCCCAGGAGGATATGGAACCCTTGAAGAATTGCTGGAAGTCATTACATGGGCTCAGCTTGGGATCCACAGCAAACCCGTGGGGCTTTTGAATGTGGATGGATTTTACAATTCCTTGTTGTCTTTCATTGACAAGGCCGTTGATGAAGGGTTTATATCTCCTAAGGCACGAGGCATTATCGTGTCAGCACCAACAGCCAAAGAATTGATGGTAGAACTAGAGGAACATGTCCCTGAGCAAGATGAGTTTGCATCCAAGTTGGTGTGGGAGGAAAGACTAAATTTCGTGACTGAATCAGAAGTGGCCATGTGA 642 0.4751 MEDTKSKFKRICVFCGSSSGKKPTYQEAAVQLGRELVERRIDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPTSLMPREITGEPIGEVRAVSNMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHSKPVGLLNVDGFYNSLLSFIDKAVDEGFISPKARGIIVSAPTAKELMVELEEHVPEQDEFASKLVWEERLNFVTESEVAM* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0593 213 Pfam Possible lysine decarboxylase 53 181 IPR031100 -
Vra3g0593 213 Gene3D - 1 185 - -
Vra3g0593 213 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE LOG2 2 206 - -
Vra3g0593 213 TIGRFAM TIGR00730: TIGR00730 family protein 9 184 IPR005269 GO:0009691|GO:0016787
Vra3g0593 213 PANTHER LOG FAMILY PROTEIN YJL055W 2 206 - -
Vra3g0593 213 SUPERFAMILY MCP/YpsA-like 7 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0593 Vra-Chr3 6492563 6496771 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0593 K22522 - gmx:100792663 402.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0593 3 6492563 6496771 Vra3g0593 3 6492563 6496771 ECH
Vra3g0593 3 6492563 6496771 Vra8g0121 8 1324443 1327962 PCT