Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0584 ATGGCCCTATCCCGTGGATCCATCCTCACTCGATCAGTGTGGTCCTCTAATTTGGAATCGGAATTCGAGTTAATCCGATCCGTCATCGACTCCTTCCCTCTCATATCGATGGACACCGAGTTCCCCGGTGTTGTTGTGCGCCCCGACACCGGCGACCCCTCCTTTCGCCACCGCGAACCAGCCGCCCACTACGCCGTGCTTAAGGCCAACGTCGACCGCCTCCACCTGATCCAGATCGGTCTCACTCTCTCCGATCAACTGGGAAACCTTCCCACACTCGGCACCTCCAATGGCTTCGTCTGGGAGTTCAACTTCCGAGACTTCGACGTCTCGCGTGACGCCCATGCTCACGATTCCGTCGAGTTGCTACGGCGTCAAGGCATCGATTTTGAGAAGAATCGGGAGTTTGGAATCGATTCGGTACGGTTCGCCGAACTCATGATGTCCTCTGGTCTGGTCTGCGATGACCCAGTTAGCTGGGTGACGTTTCACAGTGCCTATGATTTCGGGTACCTCGTGAAATTGTTGACCCAGCGCGCTCTGCCGGAGGAATTGGCAGAATTTCTCCGTCTGGTGAGGGTGTTTTTCGGTGACAGAGTCTTTGATGTGAAGCACTTGATGAAGTTCTGCTCAAATCTTCATGGAGGTTTGGACCGAGTATGCCAATCGCTGAATGTGGAAAGAGTTGTGGGGAAAAGCCACCAGGCCGGTTCCGATAGCTTGCTCACTCTGCACGCTTTTCAGAATATAAGAGAGGTTTATTTTGGCAAGGCTGATGGTCTTGTTCAGTATGCTGGTGTCTTGTATGGTTTGGAGGTTTTCTAA 825 0.5297 MALSRGSILTRSVWSSNLESEFELIRSVIDSFPLISMDTEFPGVVVRPDTGDPSFRHREPAAHYAVLKANVDRLHLIQIGLTLSDQLGNLPTLGTSNGFVWEFNFRDFDVSRDAHAHDSVELLRRQGIDFEKNREFGIDSVRFAELMMSSGLVCDDPVSWVTFHSAYDFGYLVKLLTQRALPEELAEFLRLVRVFFGDRVFDVKHLMKFCSNLHGGLDRVCQSLNVERVVGKSHQAGSDSLLTLHAFQNIREVYFGKADGLVQYAGVLYGLEVF* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0584 274 SUPERFAMILY Ribonuclease H-like 11 271 IPR012337 -
Vra3g0584 274 Pfam CAF1 family ribonuclease 13 138 IPR006941 -
Vra3g0584 274 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 4 273 IPR039637 GO:0004535|GO:0030014
Vra3g0584 274 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED 4 273 - -
Vra3g0584 274 Gene3D - 2 273 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0584 Vra-Chr3 6426202 6427452 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0584 K12581 - gmx:100790027 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0584 3 6426202 6427452 Vra3g0584 3 6426202 6427452 ECH