Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0580 ATGGCTTCACTTCCCAAAAGGCTTGAAGGAAAAGTGGCGATAATCACCGGAGGAGCTAGCGGCATCGGAGCCGCCACCGCCAAACTATTCCTCCAACACGGTGCGAAAGTGATCATTGCAGACGTGCAAGATGCTTTAGGCCACTCCCTCTGCAAAACCTTCAGCACCAACACTCCCATTCACTACCTTCACTGCGACGTAACAAGCGACTCGGACGTCAAAAACGTGGTCGAAGTCGCCATAACCAAATACGGAAAACTCGACATAATGTTCAATAATGCCGGCATCTCGGGAGACTCGAACAGATCCGTAATAGAATCCGATGAGGAAAATTTCAAAAGAGTTTTCGAGGTTAATGTGTACGGAGCTTTCTTGGGCTCCAAGCATGCGGCGAGGTTCATGGTTCCAGCGAAGAGAGGGGTGATTCTCTTCACTTCGAGCATTGCTTCGCTTCTGGGTGGCGAAACGGCGCATGCTTACGCCGTTTCAAAGCATGCGGTGGTGGGGCTGATGAAGAACCTGTGCGTTGAACTGGGGCAGCATGGAATCAGAGTGAATTGCGTTTGTCCAGGTGGCATTCCCACTCCGATGCTGAACAAGGCGTTGAAGATGAACAAGAAGGAGACACAGGAATTGCTGTGCAAGGTTGCGGTGTTGAAAGGGACGGTTCTTGAAGCTGAAGACATAGCAAAAGCTGCATTATATTTGTGCAGCGACGAGGCGAAGTTCATGAGTGGAGTTAACCTTGTTCTGGACGGTGGTTATAGCACCACCAACATGTCATTCACTTCAGTGCTGAATGGTCTCATGGATAACTACACCAACAACATCAACCATGCTTAA 843 0.4947 MASLPKRLEGKVAIITGGASGIGAATAKLFLQHGAKVIIADVQDALGHSLCKTFSTNTPIHYLHCDVTSDSDVKNVVEVAITKYGKLDIMFNNAGISGDSNRSVIESDEENFKRVFEVNVYGAFLGSKHAARFMVPAKRGVILFTSSIASLLGGETAHAYAVSKHAVVGLMKNLCVELGQHGIRVNCVCPGGIPTPMLNKALKMNKKETQELLCKVAVLKGTVLEAEDIAKAALYLCSDEAKFMSGVNLVLDGGYSTTNMSFTSVLNGLMDNYTNNINHA* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0580 280 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 147 175 IPR020904 GO:0016491
Vra3g0580 280 Gene3D - 2 270 - -
Vra3g0580 280 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 257 IPR036291 -
Vra3g0580 280 PANTHER SECOISOLARICIRESINOL DEHYDROGENASE-RELATED 2 266 - -
Vra3g0580 280 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 2 266 - -
Vra3g0580 280 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 IPR002347 -
Vra3g0580 280 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 IPR002347 -
Vra3g0580 280 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 IPR002347 -
Vra3g0580 280 PRINTS Glucose/ribitol dehydrogenase family signature 12 29 IPR002347 -
Vra3g0580 280 PRINTS Glucose/ribitol dehydrogenase family signature 85 96 IPR002347 -
Vra3g0580 280 PRINTS Glucose/ribitol dehydrogenase family signature 134 150 IPR002347 -
Vra3g0580 280 PRINTS Glucose/ribitol dehydrogenase family signature 160 179 IPR002347 -
Vra3g0580 280 PRINTS Glucose/ribitol dehydrogenase family signature 181 198 IPR002347 -
Vra3g0580 280 PRINTS Glucose/ribitol dehydrogenase family signature 219 239 IPR002347 -
Vra3g0580 280 Pfam Enoyl-(Acyl carrier protein) reductase 17 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0580 Vra-Chr3 6382306 6383597 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0580 4 254 Miscellaneous Gene Families AT4G05530 31.890 1.67e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0580 - - var:108327580 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0580 3 6382306 6383597 Vra3g0580 3 6382306 6383597 ECH