Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0579 ATGGCAAGCTCAAGCTCTGTGACCAACAAAAGGTTGGAAGGAAAAGTTGCATTGATAACAGGAGGAGCTAGTGGAATTGGGAAACGCACCGCAGAAGTGTTCGCCCAGCACGGAGCCAAAGTAGTGATCGCTGACATTCAAGACGAATTGGGGCATTCAGTGGCTGAGTCCATAGGGTCATCTATTTGTTCTTATGTCCACTGCGATGTGACCGATGAGAATCAGGTCAAAAACGCTGTCCACACAGCCGTCCAAACTTATGGCAAGCTAGACATCATGTTCAACAACGCCGGCATAGTTGATCCCAACAAGCATCGAATCATTGATAACGATAAGGCAGATTTTGAACGTGTTCTCAGCGTCAATGTTACAGGTGTTTTCCTTGGGATGAAGCATGCGGCACAGGCGATGATCCCAGCACGCAGTGGCAGCATTATCTCAACGGCGAGCATAAGCTCTTACGTCGGAGGTGCAGCTTCCCATGCATATTGTTGTGCCAAGCACGCGGTGGTTGGTCTAACTAAAAATGCAGCGGTTGAGCTCGGACAGTTCGGAATCAGGGTGAATTGTTTGTCACCTTACGCTCTTGCCACTCCGTTGGCCACCAGCTTCGTCGGAGCTAATGATGAACAGCTTGAGGCTATCATGAACTCACTCGCTAATCTCAAGGGTGTCACCCTCAAAACTGACGATGTTGCCAATGCAGCACTTTATTTTGCTAGTGATGATTCAAGCTACGTCAGTGGCCATAATTTGCTCATAGATGGAGCTTTTAGCATTGTTAATCCTTCCTTTAACATGTTTCAGTACCCCCAATCTTGA 822 0.4769 MASSSSVTNKRLEGKVALITGGASGIGKRTAEVFAQHGAKVVIADIQDELGHSVAESIGSSICSYVHCDVTDENQVKNAVHTAVQTYGKLDIMFNNAGIVDPNKHRIIDNDKADFERVLSVNVTGVFLGMKHAAQAMIPARSGSIISTASISSYVGGAASHAYCCAKHAVVGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGANDEQLEAIMNSLANLKGVTLKTDDVANAALYFASDDSSYVSGHNLLIDGAFSIVNPSFNMFQYPQS* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0579 273 Gene3D - 2 269 - -
Vra3g0579 273 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 261 IPR036291 -
Vra3g0579 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
Vra3g0579 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 IPR002347 -
Vra3g0579 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 IPR002347 -
Vra3g0579 273 Pfam Enoyl-(Acyl carrier protein) reductase 21 256 - -
Vra3g0579 273 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 5 270 - -
Vra3g0579 273 PANTHER SECOISOLARICIRESINOL DEHYDROGENASE-LIKE 5 270 - -
Vra3g0579 273 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 150 178 IPR020904 GO:0016491
Vra3g0579 273 PRINTS Glucose/ribitol dehydrogenase family signature 16 33 IPR002347 -
Vra3g0579 273 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Vra3g0579 273 PRINTS Glucose/ribitol dehydrogenase family signature 137 153 IPR002347 -
Vra3g0579 273 PRINTS Glucose/ribitol dehydrogenase family signature 163 182 IPR002347 -
Vra3g0579 273 PRINTS Glucose/ribitol dehydrogenase family signature 184 201 IPR002347 -
Vra3g0579 273 PRINTS Glucose/ribitol dehydrogenase family signature 222 242 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0579 Vra-Chr3 6373016 6374072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0579 10 258 Miscellaneous Gene Families AT4G05530 33.730 4.80e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0579 - - vra:106757419 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0579 3 6373016 6374072 Vra3g0579 3 6373016 6374072 ECH