Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0569 ATGGCAGGGGCGGAGAATAGCGACGGGAGCGGGAGTGAACGGGAATTAGCGGGAAATGGTAACAACGGGTTTTTAGAGTGTAGTCCTTCTGCTGGTAGTGAAGGGAACGACAGCGTTTCTTATGCGAACGTCTTGCGTTCGAGGAACAAGTTTGCTGACGCTCTTGCTATCTACGAGCGTGTCTTGGAGAGCGATGGTGCAAATGTGGAGGCTCTCATTGGGAAAGGGATATGCCTTCAGATGCAGAATAAGGGAAGGCTTGCGTTTGAGAGTTTTTTTGAGGCTATCAAGCTGGATCCTCAAAATGCTCGTGCTCTCACACATTGCGGCATTTTGTATAAGGACGATGGTCGCCTGGTGGAGGCTGCAGAGTCGTATCAGAAGGCTTTACGAGTGGATCCTTCATACAGAGCAGCAGCTGAATGCCTTGCCATTGTGTTAACAGATATTGGTACCAACACAAAGCTTGCTGGAAACACTCAGGAAGGAATTAAAAAATATTTTGAAGCCCTCAAAGTAGATCCACATTATGCTCCTGCATACTACAATCTTGGTGTGGTCTATTCAGAAATGATGCAATATGACATGGCCCTCACTTTCTATGAAAAAGCTGCAGCAGAGAGGCCAGTTTATGCTGAAGCATATTGCAATATGGGTGTGATTTATAAAAATCGCGGTGACTTGGATTCAGCTATTTCTTGTTATGATAGGTGTTTAACTGTATCACCTAACTTTGAGATTGCAAAGAATAATATGGCTATAGCTTTGACAGATTTAGGAACGAAGGTTAAATTGGAGGGGGACATCAACCAAGGTGTGGCTCTGTATAAGAAAGCTTTGTATTACAACTGGCATTATGCTGATGCCATGTATAATCTTGGGGTTGCTTATGGTGAGATGCTTAAGTTTGATATGGCTATTGTATTCTATGAACTTGCCTTCCACTTCAATCCACATTGTGCGGAAGCATGTAACAATCTCGGGGTTATATATAAAGATCGTGAAAACCTTGATAAAGCAGTAGAATGCTACCAGCTTGCTTTGTCAATCAAACCTAATTTTTCACAGTCGTTGAATAATCTTGGTGTTGTATACACTGTCCAGGGTAAAGTGGATGCTGCTGCAAGTATGATTGAGAAAGCTATCATTGCAAATCCAACATATGCAGAAGCATACAATAACCTAGGAGTTCTTTACAGGGATGCTGGCGATATAACTGGAGCAATTAATGCTTACGAGCAATGTCTTAAGATTGACCCTGATTCTCGGAATGCTGGTCAGAATCGCTTACTTGCAATGAATTACATAGATGAAGGAATTGATGACACACTTTTTGAGGTTCACAGGAACTGGGGTAGGCGATTCATGAGACTATATCCACGTCACACATCATGGGGTAACTCAAAAGATCCTGACCGGCCCCTTGTGATAGGCTATGTTTCGCCTGATTATTTTACCCATTCTGTATCGTATTTCATTGAAGCACCTCTTGTCTATCATGACTACTCCAATTTCAAAGTGATTGTTTATTCTGCAGTTGTCAAGGCAGATGCAAAAACCATTAGATTTAGAGAGAAAGTTACAAAGAAGGGTGGTATCTGGAAAGATATTTATGGAATTGATGAAAAGAAGGTTGCCGACATTGTTAGAGAAGATCAAGTTGATATTTTGGTAGAACTTACAGGTCATACTGCAAACAACAAATTGGGAATGATGGCATGTCGGCCTGCACCAGTTCAGGTGACTTGGATTGGTTATCCCAATACAACAGGATTGCCTACAATTGATTATAGAATCACTGATTCTCTGGCAGACCCTCCTGAAACAAAGCAGAAACACATTGAGGAGTTGGTTAGATTGCCAGAGTGTTTCCTTTGTTACACCCCTTCCCCGGAGGCTGGCCCTGTTTCTGCAACTCCAGCACTTTCCAATGGCTTCATCACATTTGGTAGTTTCAACAATCTTGCTAAGATTACACCGAAGGTATTGAAGGTTTGGGCGAGGATATTGTGTGCAATTCCAAATTCGCGCCTTGTGGTAAAATGCAAACCATTTTGTTGTGATAGCGTGCGGCAAAGATTCCTTTCAACACTAGAGCAGTTAGGCTTAGAGCCGCTACGTGTTGATCTTTTGCCCCTTATTCTGCTTAACCATGATCATATGCATGCCTATTCTCTAATGGACATAAGTTTGGATACATTTCCATATGCTGGAACAACAACAACTTGTGAATCTTTATATATGGGAGTTCCATGTGTCACTATGGCTGGTTCAGTACACGCACACAATGTTGGTGTTAGTCTTCTCAGAAACGTTGGGATGGAGCATTTGATTGCCAGAAATGAAGACGAGTACGTTGAATTGGCTAAGAAGTTGGCTTCTGACATTTCCTCACTACATAATTTGAGAATGAGCCTACGAGATCTCATGTCTAAGTCCCCTCTCTGTGATGGTGCAAAATTTACCTTAGGTCTAGAGTCAACTTACAGAAATATGTGGCACAGGTATTGTAGAGGAGATGTTCCATCTTTGAAACGCATGGAATTGTTAGAAGAAGTTGCTATGGGTGACATGACAAATAAGAATTCTGAGCAATCAAGAATTGCAAACTCAAGGGAGGACAGTCCTGGATCTGTCAAGGCCAATGGATTTGATACAATGCCGGTGTCAAAGCTTAACATAGACAGCTGCGAAGAAAACGGCGGGTCATCAAATGGCGGTAGTAAACAAGGAAAAAGACAGGTTAATGTTGAATTTCATCCGAGAATCCTTTTGTAG 2778 0.4208 MAGAENSDGSGSERELAGNGNNGFLECSPSAGSEGNDSVSYANVLRSRNKFADALAIYERVLESDGANVEALIGKGICLQMQNKGRLAFESFFEAIKLDPQNARALTHCGILYKDDGRLVEAAESYQKALRVDPSYRAAAECLAIVLTDIGTNTKLAGNTQEGIKKYFEALKVDPHYAPAYYNLGVVYSEMMQYDMALTFYEKAAAERPVYAEAYCNMGVIYKNRGDLDSAISCYDRCLTVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVALYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRENLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKVDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDITGAINAYEQCLKIDPDSRNAGQNRLLAMNYIDEGIDDTLFEVHRNWGRRFMRLYPRHTSWGNSKDPDRPLVIGYVSPDYFTHSVSYFIEAPLVYHDYSNFKVIVYSAVVKADAKTIRFREKVTKKGGIWKDIYGIDEKKVADIVREDQVDILVELTGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHIEELVRLPECFLCYTPSPEAGPVSATPALSNGFITFGSFNNLAKITPKVLKVWARILCAIPNSRLVVKCKPFCCDSVRQRFLSTLEQLGLEPLRVDLLPLILLNHDHMHAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLRNVGMEHLIARNEDEYVELAKKLASDISSLHNLRMSLRDLMSKSPLCDGAKFTLGLESTYRNMWHRYCRGDVPSLKRMELLEEVAMGDMTNKNSEQSRIANSREDSPGSVKANGFDTMPVSKLNIDSCEENGGSSNGGSKQGKRQVNVEFHPRILL* 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0569 925 Pfam Tetratricopeptide repeat 103 135 IPR019734 GO:0005515
Vra3g0569 925 ProSiteProfiles TPR repeat region circular profile. 103 135 - -
Vra3g0569 925 SUPERFAMILY TPR-like 37 261 IPR011990 GO:0005515
Vra3g0569 925 MobiDBLite consensus disorder prediction 896 912 - -
Vra3g0569 925 Gene3D Tetratricopeptide repeat domain 147 252 IPR011990 GO:0005515
Vra3g0569 925 Gene3D Tetratricopeptide repeat domain 253 443 IPR011990 GO:0005515
Vra3g0569 925 ProSiteProfiles TPR repeat profile. 355 388 IPR019734 GO:0005515
Vra3g0569 925 Pfam Glycosyl transferase family 41 642 822 IPR029489 -
Vra3g0569 925 Pfam Glycosyl transferase family 41 471 625 IPR029489 -
Vra3g0569 925 ProSiteProfiles TPR repeat profile. 178 211 IPR019734 GO:0005515
Vra3g0569 925 ProSiteProfiles TPR repeat region circular profile. 321 353 - -
Vra3g0569 925 ProSiteProfiles TPR repeat profile. 69 102 IPR019734 GO:0005515
Vra3g0569 925 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 32 848 - -
Vra3g0569 925 ProSiteProfiles TPR repeat profile. 212 245 IPR019734 GO:0005515
Vra3g0569 925 ProSiteProfiles TPR repeat profile. 287 320 IPR019734 GO:0005515
Vra3g0569 925 MobiDBLite consensus disorder prediction 859 877 - -
Vra3g0569 925 ProSiteProfiles TPR repeat profile. 389 422 IPR019734 GO:0005515
Vra3g0569 925 ProSiteProfiles TPR repeat region circular profile. 178 209 - -
Vra3g0569 925 ProSiteProfiles TPR repeat region circular profile. 212 244 - -
Vra3g0569 925 Gene3D Glycogen Phosphorylase B; 640 814 - -
Vra3g0569 925 Gene3D - 459 639 - -
Vra3g0569 925 SUPERFAMILY TPR-like 252 424 IPR011990 GO:0005515
Vra3g0569 925 MobiDBLite consensus disorder prediction 859 917 - -
Vra3g0569 925 Pfam Tetratricopeptide repeat 357 382 - -
Vra3g0569 925 SMART tpr_5 35 68 IPR019734 GO:0005515
Vra3g0569 925 SMART tpr_5 144 177 IPR019734 GO:0005515
Vra3g0569 925 SMART tpr_5 389 422 IPR019734 GO:0005515
Vra3g0569 925 SMART tpr_5 253 286 IPR019734 GO:0005515
Vra3g0569 925 SMART tpr_5 69 102 IPR019734 GO:0005515
Vra3g0569 925 SMART tpr_5 178 211 IPR019734 GO:0005515
Vra3g0569 925 SMART tpr_5 103 136 IPR019734 GO:0005515
Vra3g0569 925 SMART tpr_5 287 320 IPR019734 GO:0005515
Vra3g0569 925 SMART tpr_5 212 245 IPR019734 GO:0005515
Vra3g0569 925 SMART tpr_5 355 388 IPR019734 GO:0005515
Vra3g0569 925 SMART tpr_5 321 354 IPR019734 GO:0005515
Vra3g0569 925 Pfam Tetratricopeptide repeat 389 421 IPR001440 GO:0005515
Vra3g0569 925 Pfam Tetratricopeptide repeat 212 245 IPR001440 GO:0005515
Vra3g0569 925 Pfam Tetratricopeptide repeat 178 206 IPR001440 GO:0005515
Vra3g0569 925 Pfam Tetratricopeptide repeat 321 354 IPR001440 GO:0005515
Vra3g0569 925 Gene3D Tetratricopeptide repeat domain 34 146 IPR011990 GO:0005515
Vra3g0569 925 ProSiteProfiles TPR repeat profile. 321 354 IPR019734 GO:0005515
Vra3g0569 925 SMART sel1 287 318 IPR006597 -
Vra3g0569 925 SMART sel1 321 352 IPR006597 -
Vra3g0569 925 SMART sel1 178 209 IPR006597 -
Vra3g0569 925 Pfam Tetratricopeptide repeat 42 82 - -
Vra3g0569 925 ProSiteProfiles TPR repeat region circular profile. 389 421 - -
Vra3g0569 925 ProSiteProfiles TPR repeat profile. 103 136 IPR019734 GO:0005515
Vra3g0569 925 SUPERFAMILY TPR-like 338 788 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0569 Vra-Chr3 6274264 6292027 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0569 197 890 Glycosyltransferase AT3G11540 63.022 0.0 884
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0569 K09667 - gmx:100785784 1657.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0569 3 6274264 6292027 Vra3g0569 3 6274264 6292027 ECH