Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0568 ATGGATTCCGTTGAAGTCAACTTCAGCATTCAAAGCCACACGGAGGCAAAACAAGGTGTTCACACGTATGCTGCTCAGTGGCCAATTTCCTCTCTGGCATGGTCGATGCGTCGTGACAAAAGCCCTCGCCTTGCCATTGGCAGTTACCTGGAAGATTACACCAACAAGGTTGAACTTGTCCATTTCAACATCGACACCTTCAATTTCACCACCGACCCTCGTCTGGTGTTTGATCACCCTTATGCACCCACAAACATCATGTTCTTTCCATCCGAGGATGACACCAATCCAGACCTCATTGCCACCTCAGGCGACAACCTCAGATTGTGGGAAATCCACGAAGACCACATTCAACTGAAGTCCCCGCTAATTGGTAACAAAGTCAGCGATCACTCGGCAATTACCTCGTTTGATTGGGCAGTGTTTGACACTCGTCTTATAGCCACTTCTAGTGTGGACACCACATGCACCATCTGGGACATTGAGAGGGAAGTCATGAAGGCACAGCTAGTGGCACACGACAAAGAAGTGTACGACATTTCATGGGGTGGGTTCAATGTGTTTGCTTCGGTGTCAGGTGATGGTTCTGTGAGGGTGTTTGACTTAAGAGACAAGGAGAAATCTACCATAATTTATGAAAATCCTGTGCAGGATTGTCCCTTGCTGCGATTAGAATGGAACAAAAGCGATCCAAGATTTATGGCGACAGTGGGATTGGACAGCAACAAGGTGGTGATATTGGATATCAGGCTTCCGACCACACCGTTTATGGAGTTGAGTAAACATCGAACATGTGTTAATGCGATGTCATGGTCCCCAGATTTTGGACGACATCTGTGTTCTGTTGGCGATGATGCAAGGGCCTTCATCTGGGACGTTATGGACTCAAGGTTTCCATCAAGGAATGGTTGTGAAGTGGAGCCAGTGATGTGGTACGGATCACCGGCTGAAATCAATCAGGTCCGTTGGTCCCCAATGCAGGTCGATTGGATTGCGCTTGCTTTCTTCAACAACTTACAACTACTCAAAGTGTAG 1035 0.4754 MDSVEVNFSIQSHTEAKQGVHTYAAQWPISSLAWSMRRDKSPRLAIGSYLEDYTNKVELVHFNIDTFNFTTDPRLVFDHPYAPTNIMFFPSEDDTNPDLIATSGDNLRLWEIHEDHIQLKSPLIGNKVSDHSAITSFDWAVFDTRLIATSSVDTTCTIWDIEREVMKAQLVAHDKEVYDISWGGFNVFASVSGDGSVRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKSDPRFMATVGLDSNKVVILDIRLPTTPFMELSKHRTCVNAMSWSPDFGRHLCSVGDDARAFIWDVMDSRFPSRNGCEVEPVMWYGSPAEINQVRWSPMQVDWIALAFFNNLQLLKV* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0568 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 210 IPR001680 GO:0005515
Vra3g0568 344 Pfam WD domain, G-beta repeat 129 160 IPR001680 GO:0005515
Vra3g0568 344 Pfam WD domain, G-beta repeat 170 201 IPR001680 GO:0005515
Vra3g0568 344 SMART WD40_4 252 292 IPR001680 GO:0005515
Vra3g0568 344 SMART WD40_4 70 111 IPR001680 GO:0005515
Vra3g0568 344 SMART WD40_4 207 248 IPR001680 GO:0005515
Vra3g0568 344 SMART WD40_4 163 201 IPR001680 GO:0005515
Vra3g0568 344 SMART WD40_4 121 160 IPR001680 GO:0005515
Vra3g0568 344 ProSitePatterns Trp-Asp (WD) repeats signature. 279 293 IPR019775 -
Vra3g0568 344 PANTHER WD REPEAT-CONTAINING PROTEIN LWD1-LIKE 11 344 - -
Vra3g0568 344 SUPERFAMILY WD40 repeat-like 28 338 IPR036322 GO:0005515
Vra3g0568 344 Gene3D - 14 340 IPR015943 GO:0005515
Vra3g0568 344 PANTHER WD REPEAT CONTAINING PROTEIN 11 344 IPR045159 -
Vra3g0568 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 301 IPR001680 GO:0005515
Vra3g0568 344 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 293 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0568 K11805 - zju:107416321 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0568 3 6267547 6270015 Vra3g0568 3 6267547 6270015 ECH