Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0562 ATGGTTTTCCCTGAGTTTAGCACTACTTTTCTTTTTCTTTTATGGCTTCTATTAGTCATCAACAATGGCGTTGAAGCTTTTCATAAAATATATCCGCATCTTCAATCCGTTTCAACAATTTCCGTCGGTACACAACACAGAACTGGATACCATTTTCAACCTCGTAAACACTGGATCAATGATCCAAATGGACCCATGTATTTCAACGGATTCTACCATTTATTCTACCAATACAATCCGAACGGTTCGGTGTGGGGGAACATAGTGTGGGCACACTCGGTATCAAAGGATCTGATAAACTGGGAAGCTGTTGAACACGCGCTGTACCCATCCAAGTCTTTCGACAAATACGGGTGCTGGTCCGGCTCGGCGACGATAGTCCCAGGTATTGGACCCGTAATCCAGTACACTGGAATCGCAGACGAGAAACAAACTCAAGTCCAATGTTACGCTATACCAGAAGACCTCAAAGATCCGCACCTCCGGAAATGGGTAAAACCCGATGATTCGAACCCGTTTGTGGTCGCCGACAACCCTGTGAACGGTAGTGCGTTTAGGGACCCGACAACGGCTTGGTGGAGCAAAGATGGACACTGGAGAATAGTGGTGGGAAGCAGAAGGAAGGATAGAGGAGTGGCTTATATGTACAGAAGCAAAGACTTTAAGAAATGGGTCCGGTCCAAACACCCGCTCCATTCGAGGAAAGACACGGGTATGTGGGAGTGCCCCGATTTTTACCCGGTTTCGCTTAAAAGCAATTTGGGGTTGGACGCGTCGGCGGATGGAAATCAAACGAAACACGTGCTGAAAAATAGTCTTGATGTGACTAGGTATGAGTACTACACTTTGGGAACATATCGTAGGGATAAGGATAGGTATGTTCCTGACAAAACATCAGAAGATGGTTGGGGTGGATTAAGGTATGATTATGGCAATTTTTATGCTTCCAAGTCCTTTTTTGATCCTAGCAAGAACAGAAGAGTGATATGGGGTTGGGCAAACGAGTCTGATACCAAAGAAGACGATGTTCGTAAAGGATGGGCAGGGATTCAGGCGATTCCGCGAACGGTGTGGCTGGATCCAAATCAGAGGCAATTGTTACTGTGGCCAGTTGAAGAATTGAATAATCTTAGAGGAAAAGAAGTTAACATGAACAATCAGAAGCTTGAGAAGGGAGAGAAAGTTGAAGTAAAAGGAATCACTGCTGCACAGGCAGATCTGGAGGTTGAATTTTCAATTCCAAGTTTGGAGAAAGCAGAGACATATGATGATAAGTGGGTTGATGCACAGGAAGCTTGTGCCAATAAGGGTTCAAATGTGGAAGGTGGTGTTGGACCATTTGGGATTTTGACTTTGGCTTCTGAAAAGCTGGAGGAGTTTACTCCTGTGTTTTTCAGAATTTTCAAAGATAAAAAGAAGCATGTCATTCTCATGTGCTCTGATGCAAGAAGATCGTCTTTAAAGGGTGATTTGTATAAGCCGACATTTGGTGGCTTTGTGGACTTGGATTTGACAAAGGATAAGAAAATTTCTCTTAGGAGTTTGATTGATCACTCAGTAGTGGAAAGTTTTGGAGCAGGAGGAAAGACAATCATATTGTCTCGAGTTTATCCGCAGCTTGCAGTGTTAAAGCAAGCTCATCTTTTTGTGTTCAACAATGGCACTGAACCAATCACCATGGAAAAGCTAAAAGGATGGGACATGAAATCTGCTCAAATAAATTGA 1725 0.4359 MVFPEFSTTFLFLLWLLLVINNGVEAFHKIYPHLQSVSTISVGTQHRTGYHFQPRKHWINDPNGPMYFNGFYHLFYQYNPNGSVWGNIVWAHSVSKDLINWEAVEHALYPSKSFDKYGCWSGSATIVPGIGPVIQYTGIADEKQTQVQCYAIPEDLKDPHLRKWVKPDDSNPFVVADNPVNGSAFRDPTTAWWSKDGHWRIVVGSRRKDRGVAYMYRSKDFKKWVRSKHPLHSRKDTGMWECPDFYPVSLKSNLGLDASADGNQTKHVLKNSLDVTRYEYYTLGTYRRDKDRYVPDKTSEDGWGGLRYDYGNFYASKSFFDPSKNRRVIWGWANESDTKEDDVRKGWAGIQAIPRTVWLDPNQRQLLLWPVEELNNLRGKEVNMNNQKLEKGEKVEVKGITAAQADLEVEFSIPSLEKAETYDDKWVDAQEACANKGSNVEGGVGPFGILTLASEKLEEFTPVFFRIFKDKKKHVILMCSDARRSSLKGDLYKPTFGGFVDLDLTKDKKISLRSLIDHSVVESFGAGGKTIILSRVYPQLAVLKQAHLFVFNNGTEPITMEKLKGWDMKSAQIN* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0562 574 Gene3D Glycosyl hydrolase domain; family 43 55 383 IPR023296 -
Vra3g0562 574 Pfam Glycosyl hydrolases family 32 N-terminal domain 51 370 IPR013148 -
Vra3g0562 574 Gene3D - 384 568 - -
Vra3g0562 574 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 9 573 - -
Vra3g0562 574 SMART glyco_32 51 528 IPR001362 GO:0004553|GO:0005975
Vra3g0562 574 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE PROTEIN 9 573 - -
Vra3g0562 574 SUPERFAMILY Concanavalin A-like lectins/glucanases 370 571 IPR013320 -
Vra3g0562 574 ProSitePatterns Glycosyl hydrolases family 32 active site. 51 64 IPR018053 GO:0004553|GO:0005975
Vra3g0562 574 Pfam Glycosyl hydrolases family 32 C terminal 373 566 IPR013189 -
Vra3g0562 574 SUPERFAMILY Arabinanase/levansucrase/invertase 42 371 IPR023296 -
Vra3g0562 574 CDD GH32_Fruct1-like 57 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0562 Vra-Chr3 6207573 6211172 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0562 23 574 Glycoside Hydrolase AT2G36190 64.602 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0562 K01193 - gmx:100799008 929.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0562 3 6207573 6211172 Vra3g0562 3 6207573 6211172 ECH