Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0561 ATGTCTATGCGTCACGAGAAAGAGAAGGGCGTCAACGTCCAGGTCCTCCTCCGTTGCAGGCCGTTCAGCGACGAAGAGTTACGGAGCAACGCACCGCAAGTTGTGACTTGCAATGATTACAGTCGAGAAGTCGCCGTCTCTCAGAGTATTGCCGGCAAGCACATCGACAGGGTTTTCACCTTCGATAAGGTTTTTGGTCCTTCTGCCAGGCAAAAGGATCTTTATGAACAAGCTGTTACTCCGATAGTTAATGAAGTTCTTGAGGGTTTTAATTGTACTATTTTTGCGTATGGTCAAACTGGTACCGGGAAAACCTACACCATGGAAGGGGAGTGCAAAAGGGCCAAGAGTGGTCCCAATGGAGAGTTACCTCCGGAAGCCGGAGTCATTCCGAGGGCTGTCAAGCAGATTTTTGACACACTTGAGGGCCAGAATGCGGAGTATAGTGTGAAGGTCACCTTTTTGGAACTGTATAATGAAGAGATCACTGATTTGCTTGCCCCGGAGGAGATTTCTAAGGTTTCTTTGGAGGAGAAGCAGAAAAAACAGCTGCCTCTCATGGAGGATGGTAAAGGTGGAGTTCTTGTAAGGGGATTGGAGGAAGAGATTGTGACAAGTGCTAGTGAGATTTTTACGCTTCTGGAGAGAGGGTCTGCTAAACGACGGACTGCTGAAACTTTGTTGAACAAGCAGTCAAGTCGGTCACATTCGTTGTTTTCAATTACAATCCATATCAAGGAAGCAACCCCAGAAGGAGAAGAACTAATCAAATGTGGTAAACTTAATTTGGTTGATCTGGCTGGGTCAGAGAATATATCTCGTTCTGGTGCCAGGGAGGGCCGTGCAAGGGAAGCTGGGGAAATAAACAAAAGTTTGCTTACTTTAGGACGAGTAATCAATGCATTGGTGGAGCACCTTGGTCACATCCCTTACAGGGATAGTAAGTTAACCCGCTTACTGCGTGATTCACTCGGAGGAAGAACCAAGACATGTATCATAGCAACAGTGTCTCCTGCAGTTCATTGCTTAGAGGAAACTTTGAGCACGCTGGATTATGCACACAGGGCAAAACACATAAAAAATAAGCCTGAGGTTAACCAAAAAATGATGAAATCAACACTTATCAAAGACCTTTATGGTGAAATTGAACGTCTTAAAGCAGAGGTTTATGCTACGCGTGAGAAAAATGGTGTCTATATTCCAAAGGAAAGATTCTATCAGGAGGAGAGTGAAAAGAAGGCTATGTCAGATCAAATTGAACAGATGGGGCTCACAATAGAAACGCAACAAAAGCAACGTGAGGATTTGCAAAACAAATTAGTTGACCAAATTCAACAGTGTTCTGATTTGAGCAACAAACTCGATAGTACTGAGAAAAACTTGAACAAGACTAGCAAATTGCTTGCCAACAGAGAGGAAGAATTAAAAAAATGTCAATATACTTTGAAAGAGAAAGACTTCATCATTTCTGAGCAGAGAAAAGCAGAAAATGCACTGCATCATCAAGCATGTGTTTTACGTGCTGATTTGGAGAAATCTCTTGAGGATAATGCTTCGTTATTTTTGAAAATTGGCAGAGAAGATAAGTTGAACTCAGATAACAGAGCTGTAGTGGACAATTACCAGGCTGAGCTCGCTCAGCATGTTGGTTCTCTTTGCAGCACTGTTGCAACCTCATTGTCTGAACAGAATGAACATCTGGAAGGTGTGAAGAAGCTCTGTCATTCTTTTTTGGACGTTCATGATAAGGCCGTTGTTGATTTTAAAAAGAAAGTAACATCTCTGAGGTCCTTGTATATATCTCATATCGAGGCAGTACAAAATGTCGTGCGCTTGCATAAAGCGAACTCTGATGCTGCCTTTGAGGAACTTACTTCTGTTATATCCTCCAATGGTGATTCTATCGAAAAATTTCTTGCATCCGAGGCTACCGAAGCTGGTTCAATATTTGATGATCTTCAGGGTTCCCTTTCAACTCAGCAGGGTGAATTGGCAGTTTTTGCGAGCGAGTTACGAAATAAATTCAATCTCAGCCTTGAACAAATAAAGGATATCTCTGAGCGCTCTCAAGAATTTGTGGATAAGCTTTTTGAAGAATCAAAAAAGCTTGAAGACTACGCATCACAGGCTGACCAAGTGCAAATGAAGAGCATTGATGAGTTTAAAAAAGCTTACGAGGAGCAATCAAAATCGGATACAGAGAAACTTATTGCTAATATGACTAGTTTAGTTTCTGATCACATTCGGCGGCAAATGGATCTGGTAGACTCAAAGCTTGTTGATCTTAGGGAAAGCGGAATGAAGAACAAGTCCTTCTTGGATGGACATTTGTCTTCAATGGGAGATATTGTTACCAATGCTAAAAGGAAATGGCAGGCCTTTTGCGTGCAAGCAGAAAAAGATGCTAAAGACACTTCGGATTTTTCTGCTGCTAGGCATTGCCGTATGGAGGTGCTCATGCAGCAGAGTTTTAAGACTGCTAAGTCGGCTTTTGAGCATACAAAGAGGACACATGATGCTGTGAATGAGATGGGGACCAAACATATTTCCGCAACAGAATCAATTGTCAGGAATGCTACTGATGGCAATGCGCAACATGTCGTTGAGGTCAATTGTGCACGAATTTCAGCAGAAGAAGATGTGGCAAAGAATAGTGAGGAGCTTATTGAGCAGTTTGAGGTCACTTCAGCACTAGAACGGGAGTCCATATCTGGCGTATTAAATGTGGTGAGAACTCATGCAAATACACTTGAGACGCTACGAGAGGATCACGATAGCCAAGCTGCTTCGATTGAACACAGAGCAAGCGAAACTTTTCAACAGCAATTCAGGGATTATGAACCTACCGGTACAACACCAATAAGATGTGAAGCTGATGTTCCGACAAAGGGGACAATAGAGTCTCTTCGATCCTTGCCAATGGAATCCCTGCTTGAGGAATTCCGGGAAAACAACCCATACGAATCTTCTGATGTAAAGGAGTTGAAACCATCTCTTATTCCACGTTCGCCTCTTACTCAACTGAACTAA 3030 0.4274 MSMRHEKEKGVNVQVLLRCRPFSDEELRSNAPQVVTCNDYSREVAVSQSIAGKHIDRVFTFDKVFGPSARQKDLYEQAVTPIVNEVLEGFNCTIFAYGQTGTGKTYTMEGECKRAKSGPNGELPPEAGVIPRAVKQIFDTLEGQNAEYSVKVTFLELYNEEITDLLAPEEISKVSLEEKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKHIKNKPEVNQKMMKSTLIKDLYGEIERLKAEVYATREKNGVYIPKERFYQEESEKKAMSDQIEQMGLTIETQQKQREDLQNKLVDQIQQCSDLSNKLDSTEKNLNKTSKLLANREEELKKCQYTLKEKDFIISEQRKAENALHHQACVLRADLEKSLEDNASLFLKIGREDKLNSDNRAVVDNYQAELAQHVGSLCSTVATSLSEQNEHLEGVKKLCHSFLDVHDKAVVDFKKKVTSLRSLYISHIEAVQNVVRLHKANSDAAFEELTSVISSNGDSIEKFLASEATEAGSIFDDLQGSLSTQQGELAVFASELRNKFNLSLEQIKDISERSQEFVDKLFEESKKLEDYASQADQVQMKSIDEFKKAYEEQSKSDTEKLIANMTSLVSDHIRRQMDLVDSKLVDLRESGMKNKSFLDGHLSSMGDIVTNAKRKWQAFCVQAEKDAKDTSDFSAARHCRMEVLMQQSFKTAKSAFEHTKRTHDAVNEMGTKHISATESIVRNATDGNAQHVVEVNCARISAEEDVAKNSEELIEQFEVTSALERESISGVLNVVRTHANTLETLREDHDSQAASIEHRASETFQQQFRDYEPTGTTPIRCEADVPTKGTIESLRSLPMESLLEEFRENNPYESSDVKELKPSLIPRSPLTQLN* 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0561 1009 Coils Coil 375 395 - -
Vra3g0561 1009 PRINTS Kinesin heavy chain signature 89 110 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0561 1009 PRINTS Kinesin heavy chain signature 226 243 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0561 1009 PRINTS Kinesin heavy chain signature 260 278 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0561 1009 PRINTS Kinesin heavy chain signature 309 330 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0561 1009 PANTHER KINESIN MOTOR DOMAIN-CONTAINING PROTEIN-RELATED 1 1009 - -
Vra3g0561 1009 Coils Coil 419 474 - -
Vra3g0561 1009 Pfam Kinesin motor domain 18 359 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0561 1009 PANTHER KINESIN-LIKE PROTEIN KIF11 1 1009 - -
Vra3g0561 1009 SMART kinesin_4 10 367 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0561 1009 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 399 IPR027417 -
Vra3g0561 1009 MobiDBLite consensus disorder prediction 986 1009 - -
Vra3g0561 1009 ProSitePatterns Kinesin motor domain signature. 259 270 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vra3g0561 1009 CDD KISc_BimC_Eg5 10 368 - -
Vra3g0561 1009 Gene3D Kinesin motor domain 2 390 IPR036961 -
Vra3g0561 1009 ProSiteProfiles Kinesin motor domain profile. 12 359 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0561 Vra-Chr3 6193610 6200236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0561 12 422 Miscellaneous Gene Families AT5G06670 35.862 9.39e-65 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0561 K10398 - gmx:100800246 1788.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0561 3 6193610 6200236 Vra3g0561 3 6193610 6200236 ECH