Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0558 ATGACGGAAGTGCTTCAGTTGCCTTCATCGTCAAGCTGTGGTGGTCTCACACCCAATGATGGGTCGCACCCAAGTTCCCTTATTAACGCTCCCACTGTGGAAGAAGGGGTGCTGCCACAGTCCCCTTTGGATTTGGAAGCTGAAGAAGAAGAAGAAGAGAGAAAAAGGGAAAGAGAAAGGGATCAGCTTTCTATTTTGACCCTTTTGATAGCTACGTTTCGGAAGTCTCTGATTGGGTGCAGCACTACAGCTTCTTCTACGTCTTCTTCCATGGAGATTGGGTGGCCTTCCAATGTGAGGCACGTGGCTCATGTCACCTTCGATCGCTTCCATGGGTTTCTTGGTTTGCCTGTTGAATTTGAACCAGAAGTTCCCAGGAGGTCTCCCAGCGCTAGTGCAAATGTTTTTGGAGTTTCAACAGAATCTATGCAGCTCTCTTTTGACGCCAGAGGAAATAGTGTACCTACAATACTGCTGTTAATGCAAAGACATTTGTATGCACAAGGAGGTCTGCAGGCTGAAGGAATCTTCAGAATCAATGCTGAAAACGGTCAAGAGGAGTTTGTGAGGGAACAATTGAACAGAGGAGTTGTACCAGATGGCATTGATGTGCACTGTTTGGCAGGTCTCATAAAGGCCTGGTTCAGAGAACTACCTACTGGGGTATTGGACCCTCTCTCACCTGAGCAGGTAATGCAATCCCAGTCAGAAGAAGAATGTGCTCAGCTTGTGAGGCTTCTTCCTCCAACAGAAGCTGCCTTGCTAGATTGGGCAATAAACTTAATGGCAGATGTTGCTCAAATGGAAAGCTTGAACAAGATGAATGCACGTAATATTGCAATGGTTTTCGCACCAAACATGACCCAAATGGCGGATCCTTTGACTGCTTTGATGTATGCAGTACAAGTCATGAATTTTCTCAAGACACTGGTCGTAAAGACACTTAGGGAAAGAGAGGAGTCTATTGTAAAATCAAATCCTGGTCCAAACCTTAATTCGTTTGACGATGATGGACACCATAGCAATTCAAAAATGCTACACAAGGTTGACAGTGAAAGTGTCAACGATTGTAGTGACGATGAGGAAAATACATTATTTGTCACTGCAGAGCCATCTCAACAAAGCCCCAGTCATCTTACTGAAGATGCCTGTGAAACTGAATCCAAAAGTTTGCCGACATCTACCGAAAATTTGATTTCTGCAGGAACTAGGTTGTTGGTTGGCAGTTGTCCCTGCAATCTTTTATCTCAAATTTGCTCTTTGGCAATTGGGCTTCAAGACTGTGGCCTCACCACTGGGCAGACAAAGGGGGATCCTGCAAAATTTTGCAGGAGCAAAAGCCTTCAGTTGAGTACTTATGATATGGACAAATGTTCGAACAAGGTGGTTGAGCTTCCGGTAGCAGGAGCTGCAGAGAAGAACCTTGGAACTGCCATCATCGGGCGAATAAATTCAAGAACAGAGTTGGCTGAAGCTTGGCGTTGA 1485 0.4525 MTEVLQLPSSSSCGGLTPNDGSHPSSLINAPTVEEGVLPQSPLDLEAEEEEEERKRERERDQLSILTLLIATFRKSLIGCSTTASSTSSSMEIGWPSNVRHVAHVTFDRFHGFLGLPVEFEPEVPRRSPSASANVFGVSTESMQLSFDARGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEFVREQLNRGVVPDGIDVHCLAGLIKAWFRELPTGVLDPLSPEQVMQSQSEEECAQLVRLLPPTEAALLDWAINLMADVAQMESLNKMNARNIAMVFAPNMTQMADPLTALMYAVQVMNFLKTLVVKTLREREESIVKSNPGPNLNSFDDDGHHSNSKMLHKVDSESVNDCSDDEENTLFVTAEPSQQSPSHLTEDACETESKSLPTSTENLISAGTRLLVGSCPCNLLSQICSLAIGLQDCGLTTGQTKGDPAKFCRSKSLQLSTYDMDKCSNKVVELPVAGAAEKNLGTAIIGRINSRTELAEAWR* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0558 494 Pfam RhoGAP domain 155 289 IPR000198 GO:0007165
Vra3g0558 494 Gene3D CRIB domain 87 122 IPR036936 -
Vra3g0558 494 ProSiteProfiles CRIB domain profile. 93 106 IPR000095 -
Vra3g0558 494 PANTHER MKIAA1688 PROTEIN 1 494 IPR044785 GO:0005096
Vra3g0558 494 CDD RhoGAP 155 310 - -
Vra3g0558 494 CDD CRIB 91 131 - -
Vra3g0558 494 Gene3D Rho GTPase activation protein 125 324 IPR008936 GO:0007165
Vra3g0558 494 PANTHER RHO GTPASE-ACTIVATING PROTEIN 1 1 494 - -
Vra3g0558 494 SUPERFAMILY GTPase activation domain, GAP 133 311 IPR008936 GO:0007165
Vra3g0558 494 Pfam P21-Rho-binding domain 92 119 IPR000095 -
Vra3g0558 494 MobiDBLite consensus disorder prediction 1 59 - -
Vra3g0558 494 ProSiteProfiles Rho GTPase-activating proteins domain profile. 138 323 IPR000198 GO:0007165
Vra3g0558 494 SMART RhoGAP_3 152 315 IPR000198 GO:0007165
Vra3g0558 494 MobiDBLite consensus disorder prediction 369 391 - -
Vra3g0558 494 SMART PBD_5 93 127 IPR000095 -
Vra3g0558 494 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0558 Vra-Chr3 6173158 6177768 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0558 - - gmx:100783118 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0558 3 6173158 6177768 Vra3g0558 3 6173158 6177768 ECH