Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0549 ATGGCGACGAAGAAGTTGATGAAAGCGAGAGCATTGGCAACAGTAAAATCTTCTTCAGCGATCCCCAACCTCCCTCTTCCCTCTCCACCCTCTGACACACCCGTGTCCCAAGTTCACTATGCCCGCTTCCTGGACTTCTTGAAGGCCCATTGGGCCCCGCCGTTCACCCCCGACACCCTCCTCCACTTCCTAAAATCGAAGCTCCACCACCACCCTTCCTTCTCTCAATTCGACTTCCACCTCTTCACCTGGGCCTCCTCCCTCGACTCATTTCACCACACCCATGCCACGTTCCACTGGATGGCCCGCACCCTCGCCGCCACCCATCGCCTCCCCCAGCTCCGCGCCCTTCTCCACCTCATCGCCACCCACCCCTGCCCCTGCTCTCCCTCCATCTTCTGCTGCCCCCACACCCAACCCATCTTCTCCCACGCCATCCACGCCTTCTCCAAATCCTCCCAACTCCACCACGCCCTCTCCGCATTCCACTCCATGACCAAACTGATCGACTCCAAGCCAGACGTCGCCGTTTTCAACGTCCTCATCCACGCCTTCGTCAAACGCGGTAACCTAAACCAAGCCCTCCAGTTTTACCGCGAGATGGTGGTTAGCCACCGCGTTAAGCCTGACGTTTTCACCTTCAACATTTTGATAAGTGGTTACTGCCGGAACTCGCAGTTCGCATTGGCGTTGGATGTGTTTCAAGAGATGGGGAAAATGGGGTGCGAGCCCAATGTGGTTACTTTCAATACCTTGATCAGGGGGATGTTTAGAGAGGGGAGGGTTGAGGATGCCATTGAGATGGCTCGCGAGATGGTTCAATTAGGGTGTGAGCTTTCGTGTGTTACTTGTGAGGTTTTGGTTCAAGGGCTTTGTAAGGAAGGGAGGGTTTTGCAGGCGTGTGAGTTGTTGCTGGAGTTTTCTGAAAAGAGGGTTTTGCCTAAAGGGTTTGATTGTTTTGCTTTGGTGGAGGTTTTGTGTGGGCAAGGGTGTGCTGTGAGAGCGTTGGAAGTTGTTTATGAGTTGTGGAATGGGGGGAGTGTTCCGAGTTTGGTTGCTTGTATTGCTGTGGTTGATGGGTTGAGGGGGTTGGGGAAGACCCATGAGGTGCAGAGATTGGTGGAAAGGATGCTTGATGAGGGTATGGTGCTGGATGTTGTGACTTTCAATTGTGTTCTTCGGGATATTTGCGATGCACGCAGAACCGATGAGGCGAATAGATTGATGTTACTTGCTTTGAGCAAGGGTTTGGAACCGGATGACATGACTTATAGGACTTTGGTAATAGGGTATACGGAGGAGGGAGGGAGGGAGAAAGGAGAGTTTCTGGTGAATGAAATGTTGGATAGGGGGTTCATACCTAATCTTGCTTCATATAATAAGTTGATGAGTGGATTGTCTAATTGCAGACCCTCTACATGCCGTCAAGTAAACAAATTTGATCGCTGA 1449 0.5197 MATKKLMKARALATVKSSSAIPNLPLPSPPSDTPVSQVHYARFLDFLKAHWAPPFTPDTLLHFLKSKLHHHPSFSQFDFHLFTWASSLDSFHHTHATFHWMARTLAATHRLPQLRALLHLIATHPCPCSPSIFCCPHTQPIFSHAIHAFSKSSQLHHALSAFHSMTKLIDSKPDVAVFNVLIHAFVKRGNLNQALQFYREMVVSHRVKPDVFTFNILISGYCRNSQFALALDVFQEMGKMGCEPNVVTFNTLIRGMFREGRVEDAIEMAREMVQLGCELSCVTCEVLVQGLCKEGRVLQACELLLEFSEKRVLPKGFDCFALVEVLCGQGCAVRALEVVYELWNGGSVPSLVACIAVVDGLRGLGKTHEVQRLVERMLDEGMVLDVVTFNCVLRDICDARRTDEANRLMLLALSKGLEPDDMTYRTLVIGYTEEGGREKGEFLVNEMLDRGFIPNLASYNKLMSGLSNCRPSTCRQVNKFDR* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0549 482 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 16 470 - -
Vra3g0549 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Vra3g0549 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Vra3g0549 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Vra3g0549 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 209 IPR002885 -
Vra3g0549 482 Pfam PPR repeat 282 311 IPR002885 -
Vra3g0549 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Vra3g0549 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Vra3g0549 482 Pfam PPR repeat family 209 256 IPR002885 -
Vra3g0549 482 TIGRFAM PPR: pentatricopeptide repeat domain 282 314 IPR002885 -
Vra3g0549 482 TIGRFAM PPR: pentatricopeptide repeat domain 177 211 IPR002885 -
Vra3g0549 482 TIGRFAM PPR: pentatricopeptide repeat domain 247 280 IPR002885 -
Vra3g0549 482 TIGRFAM PPR: pentatricopeptide repeat domain 212 246 IPR002885 -
Vra3g0549 482 Pfam Pentatricopeptide repeat domain 414 464 IPR002885 -
Vra3g0549 482 Pfam PPR repeat 172 202 IPR002885 -
Vra3g0549 482 Gene3D Tetratricopeptide repeat domain 320 480 IPR011990 GO:0005515
Vra3g0549 482 Gene3D Tetratricopeptide repeat domain 134 319 IPR011990 GO:0005515
Vra3g0549 482 PANTHER ATPASE EXPRESSION PROTEIN 3 16 470 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0549 170 479 Glycosyltransferase AT1G05670 24.116 9.46e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0549 - - gmx:100796880 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0549 3 6101937 6104783 Vra3g0549 3 6101937 6104783 ECH