Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0546 ATGCCTGCGATCCCCGAAGAGCCACTCCTGGCCCCAAACCCCGACCGCTTCTGCATGTTCCCAATCCAATACCCCCAAATCTGGGAAATGTACAAGAAAGCCGAAGCCTCTTTCTGGACAGCCGAAGAGGTTGACCTCTCCCAAGACCTCCGCCACTGGGACTCCCTCACCGACGGCGAGCGCCACTTCATCACCCACGTCCTCGCCTTCTTTGCCGCCTCCGACGGCATCGTTCTCGAAAACCTTGCCGCCCGCTTCATGAAGGAAATCCAAGCCGCCGAGGCTCGTGCTTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGTCTCCTCTTGGAAACCTACATCAAAGACTCCACCGAAAAGAATCATCTGTTCCGCGCCGTCGATACCATCCCCTGTGTCGCCAAGAAGGCCCAATGGGCCTTGCGCTGGATCGATGCCACCGACTCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGAATCTTCTTCTCCGGCAGCTTCTGCTCGATATTTTGGCTCAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAACTCATATCGCGAGATGAAGGGCTCCACTGCGACTTCGCGTGCCTCTTGTACTCTCTCCTCAGGAAGAAGCTCACCGAGGAGCGCGTGAAGGAGATTGTGCGCGAAGCGGTTGACATAGAGAGGGAGTTTGTGTGCGACGCGCTTCCCTGTGCGTTGGTGGGGATGAACGGGGAGCTGATGAGTCAGTATATCGAGTTTGTCGCGGATCGGCTGCTTGGTGCGCTTGGATGCGGGAAGGTGTACGATGTTCAGAATCCCTTTGATTGGATGGAGCTTATATCTCTCCAGGGGAAAACTAACTTCTTTGAAAAGCGCGTTGGGGACTATCAGAAGGCTTCTGTAATGTCTAGCTTGAACGGTAATGGAGGGGCACATGTATTCAAGATGGACGAGGATTTTTAA 990 0.5545 MPAIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWDSLTDGERHFITHVLAFFAASDGIVLENLAARFMKEIQAAEARAFYGFQIAIENIHSEMYSLLLETYIKDSTEKNHLFRAVDTIPCVAKKAQWALRWIDATDSFAERLVAFACVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKKLTEERVKEIVREAVDIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYDVQNPFDWMELISLQGKTNFFEKRVGDYQKASVMSSLNGNGGAHVFKMDEDF* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0546 329 PANTHER RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN 5 329 IPR000358 GO:0009263
Vra3g0546 329 PANTHER RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN 5 329 - -
Vra3g0546 329 Coils Coil 218 238 - -
Vra3g0546 329 ProSitePatterns Ribonucleotide reductase small subunit signature. 105 121 IPR030475 -
Vra3g0546 329 Pfam Ribonucleotide reductase, small chain 16 282 IPR000358 GO:0009263
Vra3g0546 329 CDD RNRR2 17 291 IPR033909 GO:0009263
Vra3g0546 329 Gene3D Ribonucleotide Reductase, subunit A 3 307 IPR012348 GO:0016491
Vra3g0546 329 PIRSF NrdB 6 316 IPR000358 GO:0009263
Vra3g0546 329 SUPERFAMILY Ferritin-like 5 307 IPR009078 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0546 Vra-Chr3 6095000 6096227 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0546 K10808 - gmx:100790224 638.647