Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0545 ATGGATTACCCAAAAACGTGCATCAGTAGAGAGGGAAGGCGATTGGTGACGATGGAGCTGAAAGAGATTCAGAGACTCGAAGGTCACACTGATAGGGTTTGGAGCTTGGATTGGAACCCCGCCACTGGACACGCCGGTATTCCGCTCGTCTTTGCTTCTTGCAGCGGCGACAAAACCGTCCGAATCTGGGAGCAGAACCTCTCCTCTGGTCTATGGGCTTGCAAGGCGGTTTTGGAAGAAACACACACTCGAACTGTTCGATCTTGTGCTTGGTCACCGTCGGGGAAGCTTTTGGCCACTGGAAGTTTCGACGCCACCACTGCCATTTGGGAAAATGTTGGTGGCGATTTTGAGTGTGTTTCTACTTTGGAGGGACATGAAAATGAAGTGAAGAGTGTGTGTTGGAATGCGTCTGGCACGTTGCTAGCTACTTGTAGTAGAGATAAGTCTGTTTGGATATGGGAAGTTCTGCCCGGGAATGAGTTTGAGTGCGTGTCTGTGCTGCAAGGACATGCGCAGGATGTGAAAATGGTGAAGTGGCATCCCACAGAGGATATCTTATTTTCGTGTAGTTATGATAATAATATTAAGGTTTGGGCGGATGAAGGTGATAGTGACGATTGGCAATGCGTCCAAACCCTTGGGGTGCCTAATAATGGACATACTTCCACTGTCTGGGCTCTCTCCTTCAGTGCGAGTGGTGACAGAATGGTTTCGTGTAGCGATGATCTTACCGTGAAGGTCTGGGGAACAGAAAACACAGAGATTCAATCTGGTGGTGGGTTTGCACCCTGGAAACATCTTTGCACTCTTACCGGGTATCATGATCGGACAATTTTCTCAGTTCATTGGTCAAGAGAAGGTATCTTTGCCAGTGGAGCCGCTGATGATGCTATACGCCTTTTTGTGGATGACAATGAAAGTCAGGTTGGTGGTCCTCTCTACAAGTTGCTGCTAAAGAAAGAGAAGGCCCATGACATGGATGTAAATTTTGTGCAGTGGAGCCCTGGGGAGAAGCCGCTGCTAGCCTCTGCAAGTGATGATGGAACAATCAAGGTGTGGGAGTTGATATCATAA 1077 0.4838 MDYPKTCISREGRRLVTMELKEIQRLEGHTDRVWSLDWNPATGHAGIPLVFASCSGDKTVRIWEQNLSSGLWACKAVLEETHTRTVRSCAWSPSGKLLATGSFDATTAIWENVGGDFECVSTLEGHENEVKSVCWNASGTLLATCSRDKSVWIWEVLPGNEFECVSVLQGHAQDVKMVKWHPTEDILFSCSYDNNIKVWADEGDSDDWQCVQTLGVPNNGHTSTVWALSFSASGDRMVSCSDDLTVKVWGTENTEIQSGGGFAPWKHLCTLTGYHDRTIFSVHWSREGIFASGAADDAIRLFVDDNESQVGGPLYKLLLKKEKAHDMDVNFVQWSPGEKPLLASASDDGTIKVWELIS* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0545 358 PRINTS G protein beta WD-40 repeat signature 51 65 IPR020472 -
Vra3g0545 358 PRINTS G protein beta WD-40 repeat signature 142 156 IPR020472 -
Vra3g0545 358 PRINTS G protein beta WD-40 repeat signature 342 356 IPR020472 -
Vra3g0545 358 ProSiteProfiles Trp-Asp (WD) repeats profile. 123 156 IPR001680 GO:0005515
Vra3g0545 358 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 18 358 IPR028608 GO:0016226|GO:0097361
Vra3g0545 358 ProSiteProfiles Trp-Asp (WD) repeats profile. 168 199 IPR001680 GO:0005515
Vra3g0545 358 Pfam WD domain, G-beta repeat 74 110 IPR001680 GO:0005515
Vra3g0545 358 Pfam WD domain, G-beta repeat 22 63 IPR001680 GO:0005515
Vra3g0545 358 Pfam WD domain, G-beta repeat 208 249 IPR001680 GO:0005515
Vra3g0545 358 Pfam WD domain, G-beta repeat 118 154 IPR001680 GO:0005515
Vra3g0545 358 Pfam WD domain, G-beta repeat 163 199 IPR001680 GO:0005515
Vra3g0545 358 Pfam WD domain, G-beta repeat 323 354 IPR001680 GO:0005515
Vra3g0545 358 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 26 64 - -
Vra3g0545 358 ProSiteProfiles Trp-Asp (WD) repeats profile. 79 111 IPR001680 GO:0005515
Vra3g0545 358 PANTHER WD40 PROTEIN CIAO1 12 357 IPR028608 GO:0016226|GO:0097361
Vra3g0545 358 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 218 249 - -
Vra3g0545 358 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 358 IPR001680 GO:0005515
Vra3g0545 358 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 123 156 - -
Vra3g0545 358 ProSiteProfiles Trp-Asp (WD) repeats profile. 218 259 IPR001680 GO:0005515
Vra3g0545 358 ProSitePatterns Trp-Asp (WD) repeats signature. 142 156 IPR019775 -
Vra3g0545 358 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 79 111 - -
Vra3g0545 358 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 322 358 - -
Vra3g0545 358 SMART WD40_4 19 64 IPR001680 GO:0005515
Vra3g0545 358 SMART WD40_4 71 111 IPR001680 GO:0005515
Vra3g0545 358 SMART WD40_4 161 200 IPR001680 GO:0005515
Vra3g0545 358 SMART WD40_4 264 303 IPR001680 GO:0005515
Vra3g0545 358 SMART WD40_4 116 155 IPR001680 GO:0005515
Vra3g0545 358 SMART WD40_4 315 355 IPR001680 GO:0005515
Vra3g0545 358 SMART WD40_4 207 250 IPR001680 GO:0005515
Vra3g0545 358 ProSitePatterns Trp-Asp (WD) repeats signature. 342 356 IPR019775 -
Vra3g0545 358 CDD WD40 22 355 - -
Vra3g0545 358 ProSiteProfiles Trp-Asp (WD) repeats profile. 26 64 IPR001680 GO:0005515
Vra3g0545 358 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 168 199 - -
Vra3g0545 358 PANTHER CYTOSOLIC IRON-SULFUR PROTEIN ASSEMBLY PROTEIN CIAO1 HOMOLOG-RELATED 12 357 - -
Vra3g0545 358 Gene3D - 50 358 IPR015943 GO:0005515
Vra3g0545 358 SUPERFAMILY WD40 repeat-like 18 354 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0545 94 301 Miscellaneous Gene Families AT5G08390 27.751 8.95e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0545 K24730 - gmx:100778826 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0545 3 6085075 6090764 Vra3g0545 3 6085075 6090764 ECH