Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0540 ATGGACCACATTCCTGTGGAAGTGATCGGTAACATATTGTCTCTTCTCGGCTCTGCTCGGGATGTAGTGGTTGCTTCTGCAACTTGCAAGAAATGGAAAGAAGCATGGCGCAGTCATCTCCACAGTCTTTCTTTCAATTTTAGTGATTGGCCTCCCTATAATGACTATTCCTCTGCCAGGTTGGAAATACTCATCACTCAGACCATTTTTCAAACCAAGGCACTGCAGTTTTTGACCATTTTCATGGATGATGAGCGTGAGTTCTCTGCCGCCCCCGTCATTGCTTGGCTTATGTATACTAGGGATTCCTTGCGCCAATTGCATTACAATGTAAGGACTACCCCTAGTTTCAACATCATCGAGAAATGCAGCAGGCACAGGCTGGAGGTGCTGGCATTGGCTCGCAATTCCATCATTGGGGTTGAGCCAGGTTATTTGAAGTTTCCTTGCTTGAAGTCGCTTTCGTTGAGTTTTGTTAGCATCTCGGCGTTGGATTTGAGCCTTCTGATGTCGTCTTGTCCAAAGCTTGAAACATTGGCTATGGTTAGTCCAGATATTGCAATATCAGATTCTCAGGCTTCTTTGGAGCTTACCAGTCTTTCTTTGAAGGATTTCCACCTTGAATTGTTTAGCTCGGATAAGTTTATATTGGAGGTGGATTTGCTCGAGAAAATTCATTTGAAAGAATGTACCTTTGAGATTTTTGAGCTGGTTGGAAAGGGGACACTGAAAGCGTTGAAAATTGATGACGTGAATGTCATCCATCTCGATATTGTGGATAGTACGGAGAACCTTGAGATTATAGATGTTTGTAACTTCACAATCATGTGGCCAAAGTTTTATCACATGATCTCAAAAGCCTCAAAGTTATATAAGCTTCGGCTGTGGGGTGTTGTTTTTGATGATGAGGATGAGGTTGTTGATATAGAGACAATTTCTGTTTGCTTTCCTCTATTGACGCATTTGTCGTTAAGTTATGATTTAAGAGATGGAGTGCTTCATTATGGCTTGCAGGGTTTGTCTTGTTTGATGAATGTGGTGGTGTTAGAACTTGGATGGACTGTAATCAGTGATCTTTTCTCAGTTTGGGTGGCTGGACTTTTGGAAGGATGTCCCAATTTGAAAAAACTGGTTGTGCATGGTCATGTTTCAGAGGTAAAAACACATGAAGAGTGCCAAATTCTTTCCAGATTCTCTGAATTCATTCTTCAACTAGGAAGAAAATATGGGCATGTAAAATTTGAGTTTGAATACGAGTAG 1260 0.4151 MDHIPVEVIGNILSLLGSARDVVVASATCKKWKEAWRSHLHSLSFNFSDWPPYNDYSSARLEILITQTIFQTKALQFLTIFMDDEREFSAAPVIAWLMYTRDSLRQLHYNVRTTPSFNIIEKCSRHRLEVLALARNSIIGVEPGYLKFPCLKSLSLSFVSISALDLSLLMSSCPKLETLAMVSPDIAISDSQASLELTSLSLKDFHLELFSSDKFILEVDLLEKIHLKECTFEIFELVGKGTLKALKIDDVNVIHLDIVDSTENLEIIDVCNFTIMWPKFYHMISKASKLYKLRLWGVVFDDEDEVVDIETISVCFPLLTHLSLSYDLRDGVLHYGLQGLSCLMNVVVLELGWTVISDLFSVWVAGLLEGCPNLKKLVVHGHVSEVKTHEECQILSRFSEFILQLGRKYGHVKFEFEYE* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0540 419 Pfam F-box-like 1 36 IPR001810 GO:0005515
Vra3g0540 419 SUPERFAMILY F-box domain 2 64 IPR036047 GO:0005515
Vra3g0540 419 SUPERFAMILY RNI-like 115 382 - -
Vra3g0540 419 PANTHER F-BOX PROTEIN-LIKE 1 417 - -
Vra3g0540 419 PANTHER F-BOX/LRR-REPEAT PROTEIN 1 417 - -
Vra3g0540 419 SMART fbox_2 4 45 IPR001810 GO:0005515
Vra3g0540 419 Gene3D Ribonuclease Inhibitor 89 399 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0540 Vra-Chr3 6063320 6065209 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0540 - - gmx:100792331 738.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0540 3 6063320 6065209 Vra3g0540 3 6063320 6065209 ECH