Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0535 ATGTTGGTGCAAAGAATGTGCATGCTAGGGTTCTTGCTAATCGTCGGAATCTTCGAAATCGACGCCGTTTATGGTTACAATCGACCACCACCTCGTCAAAACCTCTTTATTCCAAACGCGGATCACTCCGACTTGCCACAACAGGTACACATATCTCAAGTGGGAGAAAACAAGATGAGGATATCGTGGATCACAGACAGCCCAACTTCACCAAAGGTTTCGTACGGTCCATCTCCTTCAGCAAATGCATTATCTGCCACAGGGACAACCTCTTCCTACCGTTATCTCATTTACAAGTCCGGTCAAATTCATGACGTTGTAATTGGTCCCCTCAACCCCAACACTGTCTACTATTACCGTTTGGGTGACCCACCCTCTTCCGAAACATACAGTTTCAAGACTCCACCTTCTCAACCTCCCATCAAGTTTGCAGTAGTTGGAGATCTTGGACAAACGGATTGGACGACTTCGACCTTGCAGCATGTAGCTAAATCAAACTACGACATGTTGATTCTACCAGGTGACCTATCCTACGCAGACTTTATTCAACCTCTATGGGACTCCTTTGGTCGGTTGGTAGAACCTTTAGCTAGCCAGCGTCCTTGGATGGTCACCCAAGGCAACCACGAAGTGGAGAAGATTCCTATCGTTCACTCAGAGCCATTCACGGCATACAACGCCAGATGGCGCATGCCCTTCGAAGAAAGTGGATCAGACTCTAACCTCTACTATTCTTTCGATGTCGCTGGCGTTCATGTCATCATGCTTGGCTCCTATGCCAAATTTCATCCATCTTCTCCGCAATACAATTGGCTTAAATCTGACCTGCAAAAGGTTAACAGGGGAAAAACTCCCTGGGTTTTGGCGCTCATTCACGCTCCTTGGTACAACTCCAACACTGCTCATCAGGGTGAGCCTGAATCCCTTGAAATGAAAGCTTCCATGGAAGACTTGCTCTTCAAAGCCCGTGTCGATGTTGTTTTTGCAGGCCATGTTCATGCTTATGAACGCTTCACACGGGTTTATAAAGACAAAGCTAACAATTGTGGTCCAGTGCATATCACAATCGGGGACGGGGGTAACCGTGAAGGCCTTGCTAATAAGTACATAGATCCTAAGCCAGCGATATCAATGTTCAGGGAGGCTAGCTTTGGACATGGTACATTCGAAGTCTTTAATGCATCTCACGCACGTTGGACATGGCATCAGAACGATAACGATGAAGCTGTTGTTAGTGATAGTATCTGGCTTACGAGTTTCTTCTCCAATCCTTCTTGTAAACAGTGA 1287 0.4646 MLVQRMCMLGFLLIVGIFEIDAVYGYNRPPPRQNLFIPNADHSDLPQQVHISQVGENKMRISWITDSPTSPKVSYGPSPSANALSATGTTSSYRYLIYKSGQIHDVVIGPLNPNTVYYYRLGDPPSSETYSFKTPPSQPPIKFAVVGDLGQTDWTTSTLQHVAKSNYDMLILPGDLSYADFIQPLWDSFGRLVEPLASQRPWMVTQGNHEVEKIPIVHSEPFTAYNARWRMPFEESGSDSNLYYSFDVAGVHVIMLGSYAKFHPSSPQYNWLKSDLQKVNRGKTPWVLALIHAPWYNSNTAHQGEPESLEMKASMEDLLFKARVDVVFAGHVHAYERFTRVYKDKANNCGPVHITIGDGGNREGLANKYIDPKPAISMFREASFGHGTFEVFNASHARWTWHQNDNDEAVVSDSIWLTSFFSNPSCKQ* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0535 428 PANTHER ACID PHOSPHATASE RELATED 13 426 IPR039331 GO:0003993
Vra3g0535 428 Gene3D - 45 137 - -
Vra3g0535 428 Pfam Purple acid Phosphatase, N-terminal domain 46 134 IPR015914 GO:0003993|GO:0046872
Vra3g0535 428 CDD MPP_PAPs 137 419 IPR041792 -
Vra3g0535 428 PANTHER PURPLE ACID PHOSPHATASE 13 426 - -
Vra3g0535 428 SUPERFAMILY Purple acid phosphatase, N-terminal domain 42 136 IPR008963 GO:0003993|GO:0046872
Vra3g0535 428 Pfam Calcineurin-like phosphoesterase 142 335 IPR004843 GO:0016787
Vra3g0535 428 SUPERFAMILY Metallo-dependent phosphatases 138 408 IPR029052 -
Vra3g0535 428 Gene3D - 138 426 IPR029052 -
Vra3g0535 428 Pfam Iron/zinc purple acid phosphatase-like protein C 350 410 IPR025733 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0535 Vra-Chr3 6014433 6018614 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0535 46 386 Miscellaneous Gene Families AT2G03450 28.224 1.52e-34 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0535 K22390 - gmx:100794764 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0535 3 6014433 6018614 Vra3g0535 3 6014433 6018614 ECH