Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0534 ATGATGGGAAGAAAATGCAGCAGAAGGTCTCTTATGGAGTTCCCAATCCCCCTCATACACACCCTATTCCTCCTTTTGTTCCCACTGCCTCTACTCTCCGAGCACAACAATTTCGTTCGTCAGCCAGCTGGTCAACTCATCATCACACCACATCAACGCTCCCATTCTGATCCGCAACAGGTGCACATTTCATTGGTGGGGAAAGAGAAGATGAGGGTGTCGTGGATAACGGAAGAGAAGCGTGCAGAATCTGTGGTGGAGTACGGAACAGAGTCAGGGGAATATAACGCAAAATCAACGGGGGAGCATACCTCGTACCGATATTTTTTGTACAATTCCGGCAAGATTCACAACGTTGTTATTGGTCCTTTGAAACCAGGCACCACTTACTTCTACAGGTGTGGAGGGTCGGGCCCAGAGTTTTCTCTCAAGACACCTCCACACAACTTCCCTCTTGAATTTGTCGTCGTTGGGGACTTGGGACAAACAGAATGGACTGCATCAACCTTGAAACATGTCGAAAGCAGGGAGTACGACGTTGCGTTGTTACCAGGAGATCTATCATACGCAGACTCCCAACAACCTTTGTGGGACTCCTTTGGTCGTTTGGTGGAACCCTATGCCAGTAAAAGGCCATGGATGGTTACTGAAGGCAACCACGAGATCGAGATTTTCCCCATTATTTACCCACAACCCTTCCAAGCCTACAATGCTCGTTGGCCTATGCCCTTCCAACAAAGTGCTTCCACCTCAAACCTCTATTACTCCTTCCAGCTTGTTGCCACCCATGTCATCATGCTAGGTTCCTACACTGACTTTCACGCCCAGTCACAACAATACAACTGGCTCCAGTCTGATCTCGCCAATATTGACAGGGCCAAGACACCTTGGCTCATTGTGTTGTTGCATGCACCTTGGTATAACACTAATGAGGCACACCAAGGTGAAGGTGAATCCATGAGACAAGCCATGGAACAATTGCTTTATAATGCCCGTGTTGACTTGGTTTTTGCTGGCCATGTTCATGCCTATGAACGCTTCACTCGAATTTACGATAACAAAGTTGACTCGTGTGGACCCATGTACGTCACCATTGGAGACGGAGGAAATCGAGAGGGGCTTGCGTTAACGTTTAAGAACCCTCCAAGCCCGCTCTCGTTGTATCGAGAACCAAGCTTTGGACATGGAAGGTTGAGAATAGTAAATGAAACACACGCACACTGGTCGTGGCACCGAAACAACGACACTGATGCAGTCGTAGCTGATGGCGTTTGGATAGAGAGTTTAAGCAGCTCCCAAGCATGTTCGATACAACAAGATGCTCCCAACGAAGAGCTATAA 1341 0.481 MMGRKCSRRSLMEFPIPLIHTLFLLLFPLPLLSEHNNFVRQPAGQLIITPHQRSHSDPQQVHISLVGKEKMRVSWITEEKRAESVVEYGTESGEYNAKSTGEHTSYRYFLYNSGKIHNVVIGPLKPGTTYFYRCGGSGPEFSLKTPPHNFPLEFVVVGDLGQTEWTASTLKHVESREYDVALLPGDLSYADSQQPLWDSFGRLVEPYASKRPWMVTEGNHEIEIFPIIYPQPFQAYNARWPMPFQQSASTSNLYYSFQLVATHVIMLGSYTDFHAQSQQYNWLQSDLANIDRAKTPWLIVLLHAPWYNTNEAHQGEGESMRQAMEQLLYNARVDLVFAGHVHAYERFTRIYDNKVDSCGPMYVTIGDGGNREGLALTFKNPPSPLSLYREPSFGHGRLRIVNETHAHWSWHRNNDTDAVVADGVWIESLSSSQACSIQQDAPNEEL* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0534 446 Pfam Calcineurin-like phosphoesterase 154 344 IPR004843 GO:0016787
Vra3g0534 446 PANTHER PURPLE ACID PHOSPHATASE 4 439 - -
Vra3g0534 446 CDD FN3 58 133 IPR003961 GO:0005515
Vra3g0534 446 Pfam Iron/zinc purple acid phosphatase-like protein C 359 418 IPR025733 -
Vra3g0534 446 Pfam Purple acid Phosphatase, N-terminal domain 58 141 IPR015914 GO:0003993|GO:0046872
Vra3g0534 446 Gene3D - 149 436 IPR029052 -
Vra3g0534 446 Gene3D - 57 148 - -
Vra3g0534 446 PANTHER ACID PHOSPHATASE RELATED 4 439 IPR039331 GO:0003993
Vra3g0534 446 SUPERFAMILY Purple acid phosphatase, N-terminal domain 49 147 IPR008963 GO:0003993|GO:0046872
Vra3g0534 446 SUPERFAMILY Metallo-dependent phosphatases 151 416 IPR029052 -
Vra3g0534 446 CDD MPP_PAPs 148 428 IPR041792 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0534 Vra-Chr3 6009635 6011889 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0534 58 444 Miscellaneous Gene Families AT2G03450 27.079 8.40e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0534 K22390 - gmx:100819446 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0534 3 6009635 6011889 Vra3g0534 3 6009635 6011889 ECH