Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0524 ATGGCGTCGGCACTTGCGGGGGATGATTTGGTGGCATCGGTGAGCAGTCGCCGGAGCTGGACGACGGGAAGTTTCCGGGAGGCGTGGATGGCGGCGCCCGACGTGTTTAATGTGAGTGGTCGCCACACGCACGAGGACGACGAGCAAGAGCTCAAATGGGCCGCCATAGAACGCTTGCCAACTTTTGAACGCATGAGAAAAGGCATGCTCAAGCACGTGCTCGACGATGGAAATGTGGTGCTCGATGAAGTCGATGTTTCCAACCTTTGCTTACCCGACAGGAAGCTCTTGGTCGACAGCATACTCAAGATTGTCGAGGAAGATAATGAGAAATTCCTACGCAGACTTCGAGATAGAGTCGATAGAGTGGGGATTGAAATTCCGAAGATTGAAGTTCGGTGCGAGAATTTATCTGTGGAGGGTGATGTGCATGATGGGAGTAGAGCACTCCCTTCCCTGCTTAATGTTTCTCTCAATGCTTTTGAGAGTGTTCTGGGATTATTTCACCTTGCACCGTCCAAGAAGAGGGAAATTCAGATTCTTAAAGATGTTAGTGGGATCGTTAAACCGTCAAGGATGACTCTCCTTTTGGGACCTCCAAGTTCTGGGAAAACAACATTGCTTTTAGCACTTGCAGGGAAACTTAATCGTGATTTAAGGGTGTCTGGGAAAGTCACTTACTGTGGGCACGAGCTAAATGAATTTGTTCCACAAAAAACCTGTGCTTATATTAGTCAACACGACATTCACTATGGAGAAATGACTGTGAGGGAGACATTAGATTTTTCAGGACGTTGTCTAGGTATTGGCACAAGGTATGAAGCATTGGTGGAACTGTCGAGAAGGGAGAGAGAAGCAGGAATAAAACCAGACCCTGAGATTGATGCATTCATGAAGGCTATAGCATTATCAGGTCAAAAAACCAATTTGGTAACAGATTATGTTCTCAAGATACTTGGGTTGGATATTTGTGCTGACATTATGATTGGAGATGAAATGAGAAGAGGCATATCTGGTGGACAAAAGAAGCGAGTAACAACAGGGGAGATGCTGGTAGGACCAGCAAAGGCACTATTTATGGATGAAATATCAACAGGGTTAGACAGTTCCACCACCTTCCAGATATGCAAGTTCTTGAGGCAAATGGTTCATATAATGGATGTAACCATGGTGGTTTCTCTTCTACAACCAGCACCAGAGACCTTTGAACTCTTTGATGACATCATCCTACTTTCAGAAGGTCAAATAGTGTACCAAGGTCCACGTGATAATGTGCTAGAGTTCTTTGAATACACTGGTTTCAAGTGTCCTGAGCGAAAAGGAATTGCTGATTTTTTACAAGAAGTGACATCCAAGAAAGACCAGCAACAATATTGGTCAAGAAGAGATGAACCTTACAGATATGTTTCAGTTCCTGAATTTGTGCAAGCTTTTAATTCCTTTGTCATAGGAGAGGAACTTGCTACTGAGCTTGGGGTTCCCTACGATAAGAGCCGAACCCACCCTGCTGCCTTAGTGAAAGACAAGTACGGTATAACAAACTGGGAGCTATTGAAGGCATGTTTTTCAAGAGAATGGCTACTTATGAAGCGCAGTGCTTTCGTTTACATATTCAAGACATCACAGATAACAATCATGTCTATTATTACATTTACTGTGTTCCTTAAAACAGAAATGCCAGTAGGAACTGTTAATGATGGACAAAAGTTCTATGGAGCATTGTTCTTTAGTCTAGTAAACGTGATGTTTAATGGGATGGCAGAACTATCTATGACTGTTTTTAAGCTTCCCGTCTTTTACAAACAAAGGGATTTCAACTTCTACCCTGCATGGGCATTTGGTTTGCCTATTTGGCTTCTCAAGATCCCTCTGTCCTTTTTGGAATCAGGGATATGGATTATCCTTACATATTACACAATTGGATTTGCTCCTTCTGCTAGCAGATTTTTCCGACAATTCTTGGCATTTTTTTGCATTCATCAGATGGCTCTCTCTCTATTTCGGTTTATTGCCGCAGCTGGTAGAACACTAGTTGTTTCTAATACACTGGGTACCTTGGCCCTACAATTGATATTTGTGCTTGGAGGTTTTGTTATTTCCAGAGATGACATTGAGCCATGGATGATATGGGGCTATTATTTATCTCCTATGATGTATGGTCAGAATGCCATAGTAATGAATGAATTCCTAGACGAAAGATGGAGTAAACCGAATACAGACTCTAGAATTGATGCACCTACAGTTGGAAAGGCGCTTCTAAAATCTAGAGGCTTCTTTACTGAAGAATATTGGTTTTGGATCTGCATTGGAGCCTTGATTGGGTTTTCTATTATCTTCAACCTCTTATTCATTTTGTGTTTAACTTATTTGAATACTTTTGGAGATTCAAAAACAGTCATCGCGGATGAAGGTGACGAAAAGAATAAGAAGTCATCCTCGAAACGGCAAATCCTTGAAGGTACAGACATGGCAGTGAGAAGTTCTTCAGAAATTGCTACTTCTTCGAACCAAGAACCAAGAAGAGGAATGGTTCTACCTTTCCAACCTCTTTCACTTGCCTTCAACCATATAAGCTACTACGTAGATATGCCTGCAGAAATGAGGAGTCGAGAAGTCAAAGGTGATCGACTTCAACTACTACAAGATGTTAGTGGTGTTTTTAGACCTGGCATATTGACAGCACTTGTGGGTGTTAGTGGTGCTGGGAAAACAACCCTTATGGATGTATTAGCTGGAAGAAAAACTGGTGGATACATCGAAGGAAGTATTAACATCTCAGGTTACCCAAAGAACCAAGCAACATTTGCTCGTGTCAGTGGTTATTGTGAACAGAACGATATTCATTCTCCACATGTTACTGTATATGAATCACTAATATTTTCAGCATGGCTTCGCCTCCCTTCAGATGTAAATGCACAAACACGAAAGATGTTTGTTGAAGAAGTTATGGAATTGGTTGAGCTTAACCCCATCAGAGATGCAATTGTGGGTCTTCCAGGAGTAGATGGTCTATCAACAGAACAAAGGAAAAGGCTTACCATTGCTGTAGAATTGGTTTCCAACCCTTCAATCATCTTCATGGATGAANCAACATCTGGCCTTGACGCTAGAGCTGCTGCTATTGTTATGCGAACTGTGAGAAACACTGTGGACACTGGCAGAACCGTTGTGTGCACGATTCATCAACCAAGTATAGACATTTTTGAAGCTTTTGATGAGCTTTTGTTGATGAAAAGAGGAGGACAGGTTATCTATGCCGGACCTCTTGGTCGCCACTCACATAAACTAATAGAATATTTTGAAGCTATCCCAGGTGTTCCAAAAATCAAGGATGGTACTAATCCGGCCACATGGATGCTTGATATCAGCTCTTCTTTAGTTGAGGCTAATATTGAGGTAGATTTTGCAGAGATTTATGCTAAGTCTACCCTTTACAGGAGGAACGAGGAGCTTATTGAGGAGCTTAGTACTCCAGCACCAGATTCCAAGGATTTGTACTTCCCAACCAAGTATTCCCAATCGTTTTTTGTTCAGTGCAAAGCTAACTTCTGGAAACAATATTGGTCTTACTGGAGATATCCTCAGTATAACGGTGTCCGATTCTTCATGACAATAGTCGAGGGATTCGTGTTTGGCGCGATTTTCTGGCATAAAGCACATAAAACCCATAAACAACAAGATTTAGGGAATCTTTTGGGAGCCATGTACGCGGCTGTGTTGTTTCTGGGAGCCATGAATGCTTCATCAGTACAACCAGTTGTTGCCATTGAAAGAACTATCTTCTACCGTGAAAGAGCAGCAGGGATGTACTCTGCATTGCCCTATGCATTTGGCCAGGTGGCAATAGAGGCAATTTATAATGCAATTCAAACAGCCATTTATTCTCTTATGCTTTTCTCAATGATGGGGTTTGATTGGAAAGCAACAAACTACTTTTGGTTCTACTACTACTTATTCATGAGCTTTATGTACTTCACATTGTATGGGATGATGATTGTAGCACTGACACCGGGTCACCAAGTGGCTGCCATTTGCATGTCCTTCTTCTTGAGTTTCTGGAACTTGTTCTCTGGCTTTATCATTCCCAGGGTGCAAATTCCTGTGTGGTGGAGATGGTATTATTGGGCTTCTCCTGTTTCTTGGACACTGTATGGCCTAATTACCTCACAACTAGGTGACAGAACTGCAGAATTGGAGATACCAGGAAATGGAAACATGGAACTGAAGGAATTCCTTAAACAAAACTTTGGTTTTGAGTATGACTTCCTTCCGGTTGTTGCTGCTGTTCATGTCGGCTGGGTTCTCCTCTTCCTGTTCGTTTTTGCCTATGGCATCAAATTTCTTAATTTCCAAAAAAGATAG 4362 0.4207 MASALAGDDLVASVSSRRSWTTGSFREAWMAAPDVFNVSGRHTHEDDEQELKWAAIERLPTFERMRKGMLKHVLDDGNVVLDEVDVSNLCLPDRKLLVDSILKIVEEDNEKFLRRLRDRVDRVGIEIPKIEVRCENLSVEGDVHDGSRALPSLLNVSLNAFESVLGLFHLAPSKKREIQILKDVSGIVKPSRMTLLLGPPSSGKTTLLLALAGKLNRDLRVSGKVTYCGHELNEFVPQKTCAYISQHDIHYGEMTVRETLDFSGRCLGIGTRYEALVELSRREREAGIKPDPEIDAFMKAIALSGQKTNLVTDYVLKILGLDICADIMIGDEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQICKFLRQMVHIMDVTMVVSLLQPAPETFELFDDIILLSEGQIVYQGPRDNVLEFFEYTGFKCPERKGIADFLQEVTSKKDQQQYWSRRDEPYRYVSVPEFVQAFNSFVIGEELATELGVPYDKSRTHPAALVKDKYGITNWELLKACFSREWLLMKRSAFVYIFKTSQITIMSIITFTVFLKTEMPVGTVNDGQKFYGALFFSLVNVMFNGMAELSMTVFKLPVFYKQRDFNFYPAWAFGLPIWLLKIPLSFLESGIWIILTYYTIGFAPSASRFFRQFLAFFCIHQMALSLFRFIAAAGRTLVVSNTLGTLALQLIFVLGGFVISRDDIEPWMIWGYYLSPMMYGQNAIVMNEFLDERWSKPNTDSRIDAPTVGKALLKSRGFFTEEYWFWICIGALIGFSIIFNLLFILCLTYLNTFGDSKTVIADEGDEKNKKSSSKRQILEGTDMAVRSSSEIATSSNQEPRRGMVLPFQPLSLAFNHISYYVDMPAEMRSREVKGDRLQLLQDVSGVFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLIFSAWLRLPSDVNAQTRKMFVEEVMELVELNPIRDAIVGLPGVDGLSTEQRKRLTIAVELVSNPSIIFMDEXTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRHSHKLIEYFEAIPGVPKIKDGTNPATWMLDISSSLVEANIEVDFAEIYAKSTLYRRNEELIEELSTPAPDSKDLYFPTKYSQSFFVQCKANFWKQYWSYWRYPQYNGVRFFMTIVEGFVFGAIFWHKAHKTHKQQDLGNLLGAMYAAVLFLGAMNASSVQPVVAIERTIFYRERAAGMYSALPYAFGQVAIEAIYNAIQTAIYSLMLFSMMGFDWKATNYFWFYYYLFMSFMYFTLYGMMIVALTPGHQVAAICMSFFLSFWNLFSGFIIPRVQIPVWWRWYYWASPVSWTLYGLITSQLGDRTAELEIPGNGNMELKEFLKQNFGFEYDFLPVVAAVHVGWVLLFLFVFAYGIKFLNFQKR* 1454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0524 1453 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 165 438 IPR003439 GO:0005524
Vra3g0524 1453 SMART AAA_5 889 1081 IPR003593 -
Vra3g0524 1453 SMART AAA_5 190 415 IPR003593 -
Vra3g0524 1453 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 852 1104 IPR003439 GO:0005524
Vra3g0524 1453 Gene3D - 866 1099 IPR027417 -
Vra3g0524 1453 Pfam ABC transporter 181 363 IPR003439 GO:0005524
Vra3g0524 1453 Pfam ABC transporter 880 1032 IPR003439 GO:0005524
Vra3g0524 1453 Pfam Plant PDR ABC transporter associated 734 800 IPR013581 -
Vra3g0524 1453 CDD ABCG_PDR_domain2 849 1087 IPR034003 -
Vra3g0524 1453 PANTHER ATP-BINDING CASSETTE TRANSPORTER 21 1453 - -
Vra3g0524 1453 CDD ABCG_PDR_domain1 170 420 IPR034001 -
Vra3g0524 1453 Pfam ABC-transporter N-terminal 106 156 IPR029481 -
Vra3g0524 1453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 875 1089 IPR027417 -
Vra3g0524 1453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 438 IPR027417 -
Vra3g0524 1453 PANTHER ABC TRANSPORTER G FAMILY MEMBER 34-RELATED 21 1453 - -
Vra3g0524 1453 Gene3D - 167 469 IPR027417 -
Vra3g0524 1453 Pfam ABC-2 type transporter 1061 1134 IPR043926 GO:0140359
Vra3g0524 1453 Pfam ABC-2 type transporter 396 449 IPR043926 GO:0140359
Vra3g0524 1453 Pfam ABC-2 type transporter 517 729 IPR013525 GO:0016020|GO:0140359
Vra3g0524 1453 Pfam ABC-2 type transporter 1178 1390 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0524 Vra-Chr3 5905201 5912829 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0524 K08711 - gmx:100786482 2623.19