Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0523 ATGGCATCCACATCTGCGAGAAATGATTTGGTGATGGGAGAAAAGCATCGCCATAGCTGGCCTTCGTTGGGTTACGAACAGAGTTGGACGTCATCTCCATTGTTAAGGAGTGGACGCAGCAAGGAAGAAGATAATGAGGAGGATCTCAAATGGGCTGCGATCGAACGTTTACCTACGCTAGACCGCATAAGAAAAGGGTTGTTGAGGGTAGTGCTTGACAATGGAAAGTTTCTACATTGGCAAGTTGACGTCGCTCATCTTAGGTTGCAAGACAAAAAGCATCTGTTGGACAGTTTACTCAAATTTGTCGATGATGATAATGAGAAATTTCTTCGTAAACTTCGAGATAGAATTGATAGAGTGGGGATTAGAATTCCAGAAATTGAAATCAGATACGAGAATCTATCAGTGGAGGGAAATGTTCATGTTGGAAATAGATCACTTCCTACCCTGCTTAATGTTGCTCTCAACACTTTTGAGACGATTCTGGGATTGGTTGGCCTTGCACCTTCCAAGAAGAGAAAAATTCGTATTCTAAAAGATGTTAGTGGAATTGTGAAACCATCAAGGATGACCCTACTTCTAGGTCCTCCAGGTGCAGGGAAAACAACGTTACTTCTAGCTCTTGCAGGGAAGCTTGACCCAGATTTAAAGGTTTGTGGGAGAGTAAGTTACTGTGGGCATGAGCTTAATGAATTTGTTTGTAGAAAAACTTGTGCCTACATTGGGCAACATGATATTCACTATGGAGAAATGACAGTGAGAGAGACATTAGATTTTACAGGACGTTGTCTAGGTGTTGGGACGAGGTATGAAATGTTAGAAGAACTTCTACGAAGGGAGAAACAAAAAGGAATCAAACCTGATCCTGACATTGATGCATTTATGAAGGCTACTGTCATATCTGGTCAAAAAACCAATTTGCAAACAGATTATGTTCTTAAGATACTTGGATTGGATATATGTGCTGAGACCATGGTTGGTAATAACATGAGAAGGGGCATCTCAGGTGGACAAAGGAAGCGGGTAACAACAGGGGAGATGCTGGTAGGACCTGCAAAAGCACTTTTAATGGATGAAATATCAACAGGACTGGACAGTTCCACCACCTTTCAGATATGCAAGTTCATGAGCCAAATGGTTCATATAATGGATGAAACCATGGTCATATCTCTTCTTCAACCACCACCAGAGACATACGAACTATTTGATGACATCATCCTACTTTCAGAAGGTCACATTGTGTACCAGGGTCCACGTCAACATGTGCTACAGTTCTTTCAAAACATGGGTTTCAAATGTCCTCCTAGAAAGGGAGTTGCTGACTTTCTACAAGAAGTAACGTCTAAGAAAGATCAGCAACAGTATTGGTTTAGAAAGGATGAACCATATAGGTATGTTTCAGTTCCAGAATTTGCCGAGTCTTTCCATTTGTTTCACGTAGGAGAACAGCTTGATACTGAGTTTAAGGTTCCTTATGATAAGAGGCAAACCCACCGAGCAGCCTTAGTTAAAGACAAGTATGGTATATCAAATTGGGAACTACTGAAGGCTTGTTTCTCAAGAGAATGGTTGCTTATGAAACGTGACATGTTTGTGTATGTATTCAGGATAATACAGTTAGTTGTGTTGTCTATTCTAGGTTTTACTGTGTTCCTTAGAGTTGAAATGCCAGTGGGCACAGTTGAAGATGGGGGAAAGTTCTTTGGTGCACTGTTTTTTTCTCTAGTGAACATAATGTTCAATGGGTTCTCAGAACAAGCCATGATTGTTTCAAGGCTTCCTGTCTTTCACAAACAAAGGGATTTCATGTTTTACCCTGCATGGGCTTTTGCCTTACCTATATGGGTTCTCAGGATCCCCATTTCTTTCGTGGAATCAACAATATGGATTGTTCTCACATACTACACGATTGGATTTGCTCCTTCAGCTAGCAGATTTTTCAAACAACTATTGACATTGTTTGGCGTCCATCAGATGGCTATCTCTCTATTCCGGCTGGTTGGTGTAATCGGTAGAACATACGTTGCTTCTAATATACTGAGTGGTTTGATATATCAACTCGTCTTTGTGCTTGGAGGATTTATTGTCTCAAAAAATAATATCAAACCATGGTTGAAATGGGGCTACTATGTTTCTCCCATGAGTTATGGTCAGAATGCTTTAGTACTAAATGAATTTTTAGATGAAAGATGGAACTCTAGATTTGACGCAGCTACGGTTGGAAAAGTGCTTCTCAAGTCTCGAGGCTTTTACACTGAAGATTACTGGTTTTGGATATGCATCGGAGCGTTGTTTGGTTTTATTCTTCTTTTCAACCTTCTCTGCATTGTTGCATTGACCTATTTGAATGCTATTGGTGATTCAAAAGCATTCATCACGGATGAAGATGACAAGAAGAATGAAGGAGGTCAGGGAATAGACATGGCAGTAAGAAATGCTTCTCATCGAGAAAGAAGAAAAGGAATGGTCATGCCGTTTCAACCTCTTTCACTTGCGTTCAATCATGTGAACTACTATGTAGACATGCCAGCCGAAATGAAAAGTGAAGGAATCGATGAAGATAGACTTCAACTACTGCATGATGCAAGTGGTGCTTTTAGACCAGGGGTATTGACAGCACTTATAGGTGTTAGTGGTGCTGGGAAGACAACCCTTATGGATGTATTAGCTGGAAGAAAAACAGGCGGATACATCGAAGGAAATATTAGCATATCAGGTTACCCAAAGAACCAAGCAACATTTGCTCGTGTCAGTGGTTATTGTGAGCAGAATGACATTCATTCTCCGAATGTTACTGTCTATGAATCACTGCTATTTTCTGCATGGCTTCGCCTTCCTTCAGATGTGAATACACAGACGCGAAAGATGTTTGTTGAAGAAATTATGGAGTTGGTTGAGCTTAAATCAATCAAAGATGCACTTGTGGGACTTCCAGGCATAAACGGTCTATCAATTGAACAGAGGAAGAGGCTTACAATTGCGGTAGAATTGGTTGCCAACCCTTCAATTATCTTCATGGATGAACCGACATCTGGTCTTGATGCTAGAGCCGCTGCTATTGTTATGCGAACTGTGAGAAACACAGTGGACACTGGCAGAACCGTTGTGTGCACTATTCATCAACCAAGCATAGACATTTTTGAAGCTTTTGATGAGTTATTTTTAATGAAAAGAGGAGGAAAAGTTATCTATGCTGGACCTCTTGGTTATCATTCACAGCAGCTCATAGAATATTTTGAAGCTATTCCAGGTGTTCCAAAAATCAACGATGGTTATAATCCTGCAACATGGATGCTTGAGATTAGCACTCCTTCATATGAAGCTCAACTTGGCATAGATTTTTCGGAGATTTACACTAACTCTACTCTTTACCTAAATAATCAAGAGCTTATCAAAGAACTCAGTACACCACCACCAGGTTCCAATGACTTGCACTTCCCAACCAAATATTCCCAGTCATTCTTTGTGCAGTGCAAGGCTTGTTTTTGGAAACAGTATTGGTCTTATTGGAGAAATCCTTCCTACAATGGCACTCGATTCTTCTTCACAATACTCATTGCGTTACTCTTTGGTCTAATTTTCCTGAATAAAGCCAAAAATATAAAAAAGCAACAAGATGTATGGGATCTTCTAGGAGCCATGTATACTGCTGTGATGTTCCTTGGAACCCAGAACACTATGGGAGTGCAGCCAATTGTTGACATAGAAAGAACCGTATTGTATCGTGAAAGAGCAGCAGGGATGTATTCAACATTGACCTATGCAATTAGTCAGGTGGCAGTGGAGACAATTTATAACGCTATTCAAACAACAGTCTTCAGTGTCATAATCTACTCCCTGATTGGGTTTGAATGGAGAGCGGCCAAAGTTTTTTCATTTTACTACTTCATGCTTGTTTGTTTGATCTACTACACACTATATGGGATGATGATTGTTGCCCTAACACCGAGTTTCCAAGTTGCAGCCATTTGCAATGCCTTCTTCTTATCCATCTGGAACACGTTCTCTGGCTTTGTCATTCCTAGGACGCAAATTCCTGTATGGTGGAGATGGTACTATTGGCTTACTCCTAATGCTTGGACACTGTATGGCATTGTTACCTCTCAACTTGGTGATGAAAATGCAGAAGTGGAAATCCCAGGAGCTGAAAACATGGCGCTGAAGGAACTGCTTAAGAAAACCTTTGGTTATGACCATCACTTCCTCCCAGTGGTTATTATTGTTCACTTAGCCTGGGTTCTCCTTTTCTTGTTTGTTTTTTCCTATGGCATCAAATTCTTGAACTTCCAGAAAAGATGA 4302 0.4056 MASTSARNDLVMGEKHRHSWPSLGYEQSWTSSPLLRSGRSKEEDNEEDLKWAAIERLPTLDRIRKGLLRVVLDNGKFLHWQVDVAHLRLQDKKHLLDSLLKFVDDDNEKFLRKLRDRIDRVGIRIPEIEIRYENLSVEGNVHVGNRSLPTLLNVALNTFETILGLVGLAPSKKRKIRILKDVSGIVKPSRMTLLLGPPGAGKTTLLLALAGKLDPDLKVCGRVSYCGHELNEFVCRKTCAYIGQHDIHYGEMTVRETLDFTGRCLGVGTRYEMLEELLRREKQKGIKPDPDIDAFMKATVISGQKTNLQTDYVLKILGLDICAETMVGNNMRRGISGGQRKRVTTGEMLVGPAKALLMDEISTGLDSSTTFQICKFMSQMVHIMDETMVISLLQPPPETYELFDDIILLSEGHIVYQGPRQHVLQFFQNMGFKCPPRKGVADFLQEVTSKKDQQQYWFRKDEPYRYVSVPEFAESFHLFHVGEQLDTEFKVPYDKRQTHRAALVKDKYGISNWELLKACFSREWLLMKRDMFVYVFRIIQLVVLSILGFTVFLRVEMPVGTVEDGGKFFGALFFSLVNIMFNGFSEQAMIVSRLPVFHKQRDFMFYPAWAFALPIWVLRIPISFVESTIWIVLTYYTIGFAPSASRFFKQLLTLFGVHQMAISLFRLVGVIGRTYVASNILSGLIYQLVFVLGGFIVSKNNIKPWLKWGYYVSPMSYGQNALVLNEFLDERWNSRFDAATVGKVLLKSRGFYTEDYWFWICIGALFGFILLFNLLCIVALTYLNAIGDSKAFITDEDDKKNEGGQGIDMAVRNASHRERRKGMVMPFQPLSLAFNHVNYYVDMPAEMKSEGIDEDRLQLLHDASGAFRPGVLTALIGVSGAGKTTLMDVLAGRKTGGYIEGNISISGYPKNQATFARVSGYCEQNDIHSPNVTVYESLLFSAWLRLPSDVNTQTRKMFVEEIMELVELKSIKDALVGLPGINGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGKVIYAGPLGYHSQQLIEYFEAIPGVPKINDGYNPATWMLEISTPSYEAQLGIDFSEIYTNSTLYLNNQELIKELSTPPPGSNDLHFPTKYSQSFFVQCKACFWKQYWSYWRNPSYNGTRFFFTILIALLFGLIFLNKAKNIKKQQDVWDLLGAMYTAVMFLGTQNTMGVQPIVDIERTVLYRERAAGMYSTLTYAISQVAVETIYNAIQTTVFSVIIYSLIGFEWRAAKVFSFYYFMLVCLIYYTLYGMMIVALTPSFQVAAICNAFFLSIWNTFSGFVIPRTQIPVWWRWYYWLTPNAWTLYGIVTSQLGDENAEVEIPGAENMALKELLKKTFGYDHHFLPVVIIVHLAWVLLFLFVFSYGIKFLNFQKR* 1434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0523 1433 Gene3D - 166 467 IPR027417 -
Vra3g0523 1433 Pfam ABC-transporter N-terminal 105 154 IPR029481 -
Vra3g0523 1433 Pfam ABC transporter 179 361 IPR003439 GO:0005524
Vra3g0523 1433 Pfam ABC transporter 860 1012 IPR003439 GO:0005524
Vra3g0523 1433 PANTHER ABC TRANSPORTER G FAMILY MEMBER 34-RELATED 32 1433 - -
Vra3g0523 1433 PANTHER ATP-BINDING CASSETTE TRANSPORTER 32 1433 - -
Vra3g0523 1433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 435 IPR027417 -
Vra3g0523 1433 Gene3D - 847 1080 IPR027417 -
Vra3g0523 1433 CDD ABCG_PDR_domain2 829 1067 IPR034003 -
Vra3g0523 1433 Pfam Plant PDR ABC transporter associated 737 793 IPR013581 -
Vra3g0523 1433 Pfam ABC-2 type transporter 515 727 IPR013525 GO:0016020|GO:0140359
Vra3g0523 1433 Pfam ABC-2 type transporter 1158 1370 IPR013525 GO:0016020|GO:0140359
Vra3g0523 1433 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 163 436 IPR003439 GO:0005524
Vra3g0523 1433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 855 1068 IPR027417 -
Vra3g0523 1433 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 832 1084 IPR003439 GO:0005524
Vra3g0523 1433 Pfam ABC-2 type transporter 394 447 IPR043926 GO:0140359
Vra3g0523 1433 Pfam ABC-2 type transporter 1041 1102 IPR043926 GO:0140359
Vra3g0523 1433 SMART AAA_5 188 413 IPR003593 -
Vra3g0523 1433 SMART AAA_5 869 1061 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0523 Vra-Chr3 5896236 5903971 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0523 K08711 - gmx:100790545 2486.45