Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0522 ATGGTTTACACCATCTCGGGAATTCGATTTCCGGTTGTTCCTTCGCTGAACGTCTCCAGCCTCCGTGGCGATCGCAGGGCAGCGTCTCTTCCTGTTTTTCTCAGAAAGAACGACTTCTCTCGGAAAATCCGTGCCGTAAAATCTTCTCACGATTCTGATTCCCCGTCTTCTGCAATTGCTGAATCTGATAAGATTCTTATTCCTCAAGATCAAGATAACTCTGCATCCTTGACAGATCAACTTGAAACTCCTGTTATAACCTCAGAGGATGCACATAATTTAGAGGATTTAACAATGGAAGATGAGGATAAATACAGCATTAGTGAAGCAGATACCAGTTACAGACAGATTGAAGATGAGCTAGGTTCTGTGGTTTCTGTTGGCAAGAAAGCAAATATACCAAGTGATGAAGCTAAACCTAAGACCATTCCCCGACCTGGTGCTGGACAGAAAATATATGAGATTGATCCATCTTTGCTAGCCCACCGCGAGCATCTTGATTTCCGTTTCGGACAATACAAAAGATTGCACGATGAAATTAATAAGTATGAAGGTGGTCTGGATACATTTTCTCGTGGCTATGAAAAATTTGGCTTCATACGCAGTGCTACAGGCGTTACTTACAGAGAGTGGGCACCTGGAGCTAAGTCAGCAGCATTAATTGGAGACTTCAACAATTGGAATTCAAATGCAGATGTAATGACTCGGAATGAGTTTGGTGTTTGGGAGATTTTTTTGCCAAACAATGTGGATGGTTCACCACCAATTCCTCATGGTTCTCGGGTCAAGATCCGCATGGATACTCCCTCTGGAGTCAAGGACTCGATTCCTGCTTGGATCAAGTTTTCTGTACAGGCTCCTGGTGAAATTCCATATAGCGGAATATACTATGATCCCCCAGAAGAGGAAAAATATGTATTCAAACATCCACAGCCAAAGAGACCAAAATCACTTAGAATATACGAGTCACATGTTGGAATGAGTAGTCCGGAGCCAATGATCAACACATATGCCAATTTTAGAGATGATGTACTACCTCGCATTAAAAAGCTTGGCTACAATGCTGTCCAGATTATGGCCATTCAAGAACATTCTTATTATGCCAGCTTTGGGTACCATGTCACAAATTTCTTTGCACCTAGCAGCCGATTTGGAACTCCAGAGGAACTTAAATCTCTGATAGACAAAGCCCATGAACTAGGTCTGCTTGTTCTGATGGATATTGTACACAGCCATGCATCAAATAATACTTTGGATGGCCTAAACATGTTTGATGGAACTGATAGTCATTACTTCCATCCTGGGTCACGGGGTTATCATTGGATGTGGGATTCTCGTCTTTTCAATTATGGAAGCTGGGAAGTACTAAGGTATCTACTTTCAAATGCAAGATGGTGGCTGGATGAATACAAGTTTGACGGATTTCGATTTGATGGTGTTACATCAATGATGTACACTCATCATGGGTTGCAGGTAGCATTCACTGGAAATTACAGTGAGTACTTTGGTATGGCAACTGATGTTGATGCTGTGGTTTACCTGATGCTGGCTAATGATCTCATTCATGGGCTCTTCCCCGAGGCTGTTACCATTGGTGAAGATGTGAGTGGAATGCCAACATTCTGCCTTCCTACACAAGATGGTGGGGTTGGTTTTGATTATCGCCTGCAAATGGCCATTGCAGACAAGTGGATTGAGATTCTCAAGAAGCAAGATGAGGACTGGAAAATGGGTGATATTGTCCACACACTAACAAACAGAAGATGGCTGGAAAAATGTGTAGCTTATGCTGAGAGTCATGATCAGGCCTTGGTTGGTGACAAGACAATTGCATTTTGGTTGATGGACAAGGATATGTATGACTTCATGGCGTTAGACAGGCCATCTACACCTCGTATAGATCGTGGTATAGCATTACACAAAATGATTAGGCTTATTACCATGGGACTTGGTGGTGAAGGGTATTTGAATTTTATGGGGAATGAGTTTGGCCATCCTGAGTGGATTGATTTTCCAAGGGGTGAACAACAACTTCCTAATGGCTCAGTAATTCCAGGGAACAACTACAGTTATGATAAATGCAGGCGAAGATTTGACTTGGGAGATGCGGACTATTTAAGATATCGAGGAATGCAAGAATTTGATCGAGCCATGCAGCTTTTAGAAGAAAAGTTTGGATTCATGACTGCTGAGCACCAATATATTTCACGGAAAAATGAAGGTGACAAAGTTATAATCTTTGAAAGGGGCAACCTCGTCTTTGTCTTCAATTTCCATTGGCATAACAGTTATTCAGATTACAGAGTTGGCTGCTCAACCCCTGGGAAATATAAGATTGTCTTGGATTCAGATGATGCCTTGTTTGGTGGCTTCAATAGGCTCAACCACTCTGCTGAGTACTTCACTAATGAAGGATGGTATGATGACAGACCTCGATCCTTTCTTGTTTATGCACCTTCTAGGACAGCAGCAGTTTATGCCCTTGCAGATGATGATCTGGAACCAGCCCTTTCAGACGAAGCTGAACCAGTCCTTGCAGATGAAGCTGAACCAGAGCCAGTTGATCCTTGA 2571 0.4255 MVYTISGIRFPVVPSLNVSSLRGDRRAASLPVFLRKNDFSRKIRAVKSSHDSDSPSSAIAESDKILIPQDQDNSASLTDQLETPVITSEDAHNLEDLTMEDEDKYSISEADTSYRQIEDELGSVVSVGKKANIPSDEAKPKTIPRPGAGQKIYEIDPSLLAHREHLDFRFGQYKRLHDEINKYEGGLDTFSRGYEKFGFIRSATGVTYREWAPGAKSAALIGDFNNWNSNADVMTRNEFGVWEIFLPNNVDGSPPIPHGSRVKIRMDTPSGVKDSIPAWIKFSVQAPGEIPYSGIYYDPPEEEKYVFKHPQPKRPKSLRIYESHVGMSSPEPMINTYANFRDDVLPRIKKLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFGTPEELKSLIDKAHELGLLVLMDIVHSHASNNTLDGLNMFDGTDSHYFHPGSRGYHWMWDSRLFNYGSWEVLRYLLSNARWWLDEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGMATDVDAVVYLMLANDLIHGLFPEAVTIGEDVSGMPTFCLPTQDGGVGFDYRLQMAIADKWIEILKKQDEDWKMGDIVHTLTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPRGEQQLPNGSVIPGNNYSYDKCRRRFDLGDADYLRYRGMQEFDRAMQLLEEKFGFMTAEHQYISRKNEGDKVIIFERGNLVFVFNFHWHNSYSDYRVGCSTPGKYKIVLDSDDALFGGFNRLNHSAEYFTNEGWYDDRPRSFLVYAPSRTAAVYALADDDLEPALSDEAEPVLADEAEPEPVDP* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0522 856 CDD E_set_GBE_euk_N 204 297 - -
Vra3g0522 856 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 13 838 IPR037439 GO:0003844|GO:0005978
Vra3g0522 856 SUPERFAMILY Glycosyl hydrolase domain 731 829 - -
Vra3g0522 856 MobiDBLite consensus disorder prediction 45 64 - -
Vra3g0522 856 SMART aamy 335 715 IPR006047 GO:0005975
Vra3g0522 856 Pfam Alpha amylase, C-terminal all-beta domain 734 827 IPR006048 GO:0003824|GO:0005975|GO:0043169
Vra3g0522 856 SUPERFAMILY (Trans)glycosidases 308 719 IPR017853 -
Vra3g0522 856 Gene3D - 730 835 IPR013780 -
Vra3g0522 856 Pfam Alpha amylase, catalytic domain 345 417 IPR006047 GO:0005975
Vra3g0522 856 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 2-1, CHLOROPLASTIC/AMYLOPLASTIC 13 838 - -
Vra3g0522 856 CDD AmyAc_bac_euk_BE 301 716 - -
Vra3g0522 856 Gene3D Glycosidases 156 725 - -
Vra3g0522 856 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 196 279 IPR004193 GO:0004553|GO:0005975
Vra3g0522 856 SUPERFAMILY E set domains 190 299 IPR014756 -
Vra3g0522 856 Gene3D Immunoglobulins 192 304 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0522 Vra-Chr3 5878939 5892585 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0522 28 832 Glycoside Hydrolase AT5G03650 77.516 0.0 1311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0522 K00700 - gmx:100816963 1620.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0522 3 5878939 5892585 Vra3g0522 3 5878939 5892585 ECH