Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0513 ATGCCAACTCTGATGTTCAACATGTTCGCGGCTCATCAGCCTTGGTTTATGGTCATTGTACTTCTGTCTATCGAGATCATCACCTCCAGATGCAGTTCCACCACGCAAGAGCTTCACACGGGCTTCTCAGCCACACCAGACTCTTCAACGCCGTCGTTTCAGCCACTTCTCACTGACCCCAGCGGAAACTTTTCTCTGGGCTTCCTCCGCGTCAACCGAAACCAGCTGGCACTAGCCATCCTTCACGTCCCATCCTCGGACCCTTTCTGGGTGGCCAACCCAACCCGCGCAGCTTCCTGGTCCGACAACACGCGCCTCCTCTTCAATGGTAGTCTCGTGCTGTCGGACTCCGAAACGGGCGTTTCGTGGTCAACCGCCACAAACGGAGACCGTGCCGTGCTCCTCAACACCTCCAACTTGCAGGTCCAAACCCAAGGTAGTCCCCTCTGGGAGAGTTTTGACTTTCCAACAAATACCATCGTCCAGGGCCAGAATTTCACTTCCAAAATGTCTTTGTTATCCTCCAACGGATTATATTCGATGCGGTTAGGCAGCGATTATATGGGACTATACGAAGGAAACGGAGATTTATACTGGAAACGCACGGTACTGGAGACGAAAGCGGAAGTGAAGGAAGGTAAGGGACCGATTTACGCCCGAGTCAACCCGGAGGGTTACCTCGGGATGTATCAGACAAACGACGAGAAACCCGCGGATGTTCAAAAGTTCAACAGCTTTCAACAGGCTGTCACCGCGGCGTCGTTTTTGTTCGTGCGGATGGAACAGGACGGGAATTTGAAAGGTTATTACTGGGACGGTTCCAAGTGGCTAATTAACTACCAGGCTATTTCTGAGACCTGCGAACTCCCCCGCTCCTGCGGTTCCTACGGTTTGTGCACGCCCGGCGTGTCTGGATGCTCCTGCTTAGATAACCAGACCCGGTTCGAAGAGGGTGGGTGTTTCAACGATGTTGGTGGAGAGTTGTGTGGGGAAGAAGGGATTGGTGGGAGTAGAAACGGTTACTGGGTGCTGAGAAAGACCGGCGTGGAGCCACCGCATAAGGAGCTCCTTAGCCACGTAACGAAGTCGTCTTTGGCGGAATGCGAGGAGTTCTGCGAGAAGAACTGTAGCTGTTGGGGAGCGCTGTATAACAACGGCACCGGGTTTTGCTACATGTTGGATAGTCCGATCGGAACATTGTTGGGTAGCGGAGATGCGACAAAAGTGGGGTATTTCAAAGTTAAAAAAGGGGAACGAGAAAATAAACGGGTTTGGGTACGGGTCGGAATTGTGATTACGGTTTTGGTAATGGTTGGGATTATTGTTGTTGGGACGGGGCTTTGTGTGAGACGATGGAAAAGGAGAAGAGGAGTGAAGGAAGAAGATTGGGCCTCGCCCGGCCCGTATAAAAATCTTGGATCTGCGAGTTTTAGATCCATCGAAATGAGCAATAGATAA 1458 0.5178 MPTLMFNMFAAHQPWFMVIVLLSIEIITSRCSSTTQELHTGFSATPDSSTPSFQPLLTDPSGNFSLGFLRVNRNQLALAILHVPSSDPFWVANPTRAASWSDNTRLLFNGSLVLSDSETGVSWSTATNGDRAVLLNTSNLQVQTQGSPLWESFDFPTNTIVQGQNFTSKMSLLSSNGLYSMRLGSDYMGLYEGNGDLYWKRTVLETKAEVKEGKGPIYARVNPEGYLGMYQTNDEKPADVQKFNSFQQAVTAASFLFVRMEQDGNLKGYYWDGSKWLINYQAISETCELPRSCGSYGLCTPGVSGCSCLDNQTRFEEGGCFNDVGGELCGEEGIGGSRNGYWVLRKTGVEPPHKELLSHVTKSSLAECEEFCEKNCSCWGALYNNGTGFCYMLDSPIGTLLGSGDATKVGYFKVKKGERENKRVWVRVGIVITVLVMVGIIVVGTGLCVRRWKRRRGVKEEDWASPGPYKNLGSASFRSIEMSNR* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0513 485 Gene3D - 55 188 - -
Vra3g0513 485 SUPERFAMILY alpha-D-mannose-specific plant lectins 87 158 IPR036426 -
Vra3g0513 485 PIRSF SLG 3 428 IPR035446 -
Vra3g0513 485 SMART blect_4 47 156 IPR001480 -
Vra3g0513 485 PANTHER - 43 474 - -
Vra3g0513 485 Pfam S-locus glycoprotein domain 251 310 IPR000858 GO:0048544
Vra3g0513 485 ProSiteProfiles PAN/Apple domain profile. 329 416 IPR003609 -
Vra3g0513 485 PANTHER OS11G0149900 PROTEIN 43 474 - -
Vra3g0513 485 Pfam D-mannose binding lectin 89 171 IPR001480 -
Vra3g0513 485 Pfam PAN domain 360 400 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0513 Vra-Chr3 5770266 5772317 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0513 - - gmx:100812159 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0513 3 5770266 5772317 Vra3g0513 3 5770266 5772317 ECH