Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0502 ATGGATCGTTTTTCTTCCAGTACCGTTATCCCTGAAGCGTTCCAAGGGGCCAAAGATGACCTCACCACACAGCTTGCATTGGTTTGGAATCAAATCAAAGCGCCATTGATTGTCCCGTTGCTGAGACTGGCAGTGTTTCTGTGCTTGATCATGTCGGTGATGATGTTGGTTGAGAGGGTCTACATGAGCGTTGTCATAACTCTGGTGAAGTTGTTTGGGAGAAAGCCCGAGAAACGTTACAAATGGGAGCCAATGAAGGACGACATAGAGTTGGGAAACTCTTCTTACCCAATGGTTCTCGTTCAAGTCCCCATGTACAACGAAAGAGAGGTTTATCAGCTCTCTATTGGAGCTGCTTGTGGGCTTTCTTGGCCTTCGGATAGGATCATCATACAAATCCTTGATGACTCCACTGACCCAACAATCAAGGAGATGGTGCAGCTTGAATGTCAAAGATGGGCAAGCAAAGGGGTGAACATAAAGTATGAGGTTAGAGACAACAGGAATGGGTACAAAGCAGGGGCTCTCAAAGAAGGCATGAAGCGTAGCTACGTGAAACAATGTGATTGTGTTGCAATCTTTGACGCTGATTTTCAACCAGAGCCTGACTTCTTGTGGCGGACCATCCCATTCTTAGTGCACAATCCCGAACTAGCTCTCATTCAAGCTCGGTGGAAATTTGTGAATGCCGATGAATGTTTGATGACCAGAATGCAAGAGATGTCATTGGATTACCATTTTACTGTGGAACAAGAAGTGGGGTCTTCCACTTACGCCTTCTTTGGATTCAACGGGACTGCGGGAGTGTGGAGAATATCTGCATTGAATGAGGCTGGTGGATGGAAGGATAGGACCACAGTGGAAGATATGGACTTGGCTGTGCGAGCCAGTCTCAAAGGATGGAAATTCTTATACTTGTCTGACTTGAAGGTTAAAAATGAATTGCCAAGCACTCTCAAGGCCTACCGTTACCAGCAGCACCGTTGGTCTTGTGGTCCTGCCAATCTTTTTAGAAAAATGGTCTTGGAGATCATAAACAACAAGAAAGTGTCATTGTGGAAGAAAATACACGTGATATACAGCTTCTTCTTTGTTCGGAAGGTCGTAGCACACATCAACACCTTTGTGTTCTACTGCATTGTATTGCCTGCAACAGTTTTGGTGCCTGAGGTTGTGGTCCCAAAGTGGGGAGCTGTTTATATCCCTTCTGTCATCACTATTCTAAATGCAGTTGGAACTCCAAGGTCATTCCATCTGCTTGTGTTCTGGATTCTCTTTGAGAATGTCATGTCCCTGCACCGAACCAAGGCAACGATTATTGGTCTACTAGAGGCTAGTCGAGTGAACGAATGGGTGGTCACAGAAAAACTTGGTGATGCTTTGAAGGCTAAAGCAGGAGGCAAAGCACCTAAAAAGCCTCGATTCAAGATTGGAGACAGAATTCATTTATTAGAACTTGGGGTTGCATTCTACCTCTTCTTTTGTGGGTGCTATGATGTTATGTTCGGGAAAAACCACTTCTTCATCTTCCTCTTTATCCAATCTCTTGCCTTCTTCATTATGGCATTTGGATATGTTGGCACCATTGTTCCTCAGTCCTAG 1602 0.4488 MDRFSSSTVIPEAFQGAKDDLTTQLALVWNQIKAPLIVPLLRLAVFLCLIMSVMMLVERVYMSVVITLVKLFGRKPEKRYKWEPMKDDIELGNSSYPMVLVQVPMYNEREVYQLSIGAACGLSWPSDRIIIQILDDSTDPTIKEMVQLECQRWASKGVNIKYEVRDNRNGYKAGALKEGMKRSYVKQCDCVAIFDADFQPEPDFLWRTIPFLVHNPELALIQARWKFVNADECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLSDLKVKNELPSTLKAYRYQQHRWSCGPANLFRKMVLEIINNKKVSLWKKIHVIYSFFFVRKVVAHINTFVFYCIVLPATVLVPEVVVPKWGAVYIPSVITILNAVGTPRSFHLLVFWILFENVMSLHRTKATIIGLLEASRVNEWVVTEKLGDALKAKAGGKAPKKPRFKIGDRIHLLELGVAFYLFFCGCYDVMFGKNHFFIFLFIQSLAFFIMAFGYVGTIVPQS* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0502 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 89 313 IPR029044 -
Vra3g0502 533 PANTHER BNAC09G36340D PROTEIN 1 532 - -
Vra3g0502 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 373 IPR029044 -
Vra3g0502 533 PANTHER - 1 532 - -
Vra3g0502 533 Pfam Glycosyl transferase family group 2 191 381 IPR001173 -
Vra3g0502 533 CDD CESA_CaSu_A2 97 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0502 Vra-Chr3 5652347 5657473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0502 1 532 Miscellaneous Gene Families AT5G03760 79.174 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0502 K13680 - gmx:100782772 1038.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0502 3 5652347 5657473 Vra3g0502 3 5652347 5657473 ECH