Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0491 ATGGGGGCCTCGCTGTCGAACCTAGGAAGCAACGGTTCGGCCGCTGCTCCGGGCCTCGGCGACATCCCGGAGAATTGCGTCGCCCGCGTTTTCCTCCACCTCACTCCGCCGGAGATATGCAACCTAGCGCGCCTCAACCGCTCTTTTCGCGGCGCTGCCTCTGCCGATTCCGTCTGGCAAACGAAGCTGCCTACCAACTACCAAGATCTGCTCGATTTGATGCCTCCCGAGAGGTACCGGAATCTCTCCAAGAAGGACATTTTCGCGCTGCTCTCTCGGCCAGTGCCGTTCGACGACGGCAACAAAGAAGTGTGGCTGGACAGGGTCACGGGAAGGGTTTGCATGTCAATTTCGGCGAAGGCGATGTCTATTACTGGAATTGATGACCGTAGATACTGGACTTGGGTTCCTACTGAAGAATCTAGGTTCAACACTGTAGCATATTTGCAGCAAATATGGTGGTTTGAAGTGGACGGGGAGGTCAGCTTCCCATTTCCTGCTGATATTTATACTCTATCCTTTAGGCTTCACCTTGGACGATTTTCAAAGAGGCTTGGGCGACGTGTGCGCAACTATGAACACACCCATGGCTGGGACATAAAACCAGTGAAATTTGAGTTGTCAACCATGGATGGTCAGCGAGCTTCATTCGAGTGCTGCCTGCATGAAGCTGAACCTGATGATGCACACGGCAACCAAAAGTGCGGACATTGGGTAGATTACAAGGTGGGTGAGTTTATTGTCAGGGGATCAGAACCTACAACCAAAGTAAGATTCTCCATGAAACAGATTGACTGTACACACTCTAAAGGTGGGCTTTGTGTAGATTCTGTATTTATTATACCTAGTCATTTGAGAGAGCGCACCAGAAGCGGAATTCTGAAATAA 888 0.5079 MGASLSNLGSNGSAAAPGLGDIPENCVARVFLHLTPPEICNLARLNRSFRGAASADSVWQTKLPTNYQDLLDLMPPERYRNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCMSISAKAMSITGIDDRRYWTWVPTEESRFNTVAYLQQIWWFEVDGEVSFPFPADIYTLSFRLHLGRFSKRLGRRVRNYEHTHGWDIKPVKFELSTMDGQRASFECCLHEAEPDDAHGNQKCGHWVDYKVGEFIVRGSEPTTKVRFSMKQIDCTHSKGGLCVDSVFIIPSHLRERTRSGILK* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0491 295 PANTHER F-BOX DOMAIN, PHLOEM PROTEIN 2-LIKE PROTEIN-RELATED 1 288 - -
Vra3g0491 295 SMART fbox_2 22 62 IPR001810 GO:0005515
Vra3g0491 295 ProSiteProfiles F-box domain profile. 16 62 IPR001810 GO:0005515
Vra3g0491 295 SUPERFAMILY F-box domain 15 88 IPR036047 GO:0005515
Vra3g0491 295 Gene3D - 19 61 - -
Vra3g0491 295 Pfam Phloem protein 2 113 282 IPR025886 -
Vra3g0491 295 PANTHER F-BOX PROTEIN PP2-A15 1 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0491 Vra-Chr3 5561932 5567470 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0491 - - gmx:100807328 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0491 3 5561932 5567470 Vra3g0491 3 5561932 5567470 ECH