Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra3g0487 | ATGGCGTCGGGACAGCAATTCAAGGGAGACAGAGCGGAGGCAGCGGCCAAACTTGCAGCCAAAGACATCGGCGATATCAACAGAGCGAACGAGCGCAACGACAACTACGACCTTCATTCCGAGGCCAACTTTAAGCAAGCACGAGCAGAAGCAGCTGCGAAGCTCGCCGCAAAGGATCTGGAGGATGTTAACAGAATGAGGGACAACAATGCCACCACATTCAAAGAGCAGCAGCACTACGGCGAGAACAGACCCGGTGTGATAGGGTCCATGTTCAGAGCCGCTAAGGAAGCGGTGGTTGGGAAGCCTCGAGATGCGGTTGAGACCTCGCCAGGGGTTTATGATTCCAACAGAGAGAGGATAACGAAGGAGCAAGGTGGGTCGAAGATGGGGGAATATGCAGATTATGCGACCCAGAAGGCGAAGGAAACGAAGGATGCAACGGTGCAGAAGGCTGGGGAGTACACGGACTTTGCGACTCAGAAAGCAAAAGAAAGCAAGGACTATGCGGTGGATAAGGCAAAGGAAGCTAAAGATGCTACGGTGCAGAAAGCTTCAGAGTACAAGGATTATACTGCTGAGAAGGCTAAGGAAGGGAAGGACAGTGCAACGGGGAAGCTTGGGGAGTTGAAGGACTCTGCTGCTGATGCTGCTAAAAGAGCTATGGGATACTTCACAGGCACCAGAGACGAAACAAAGGTAGGTGGAACGGCGGAGGATACCAGGCGAAGAACCCAAGAGGTGAGGGTGCAGGATAAGGACTATGGAACGGGGCATGGAGGAGAGAAGGTGGTTATAAAAATGGAAGAGTCTCGCCCGGGAGCGGTGGCGGATGCTATGAAAGCGGCGGAGAGGGCCTTGGGCGGCGAGATGGAGGAAGAAGGTATCCTTCGTGTGGAGCGTCGTAGGGAGAAAATGTGA | 921 | 0.5364 | MASGQQFKGDRAEAAAKLAAKDIGDINRANERNDNYDLHSEANFKQARAEAAAKLAAKDLEDVNRMRDNNATTFKEQQHYGENRPGVIGSMFRAAKEAVVGKPRDAVETSPGVYDSNRERITKEQGGSKMGEYADYATQKAKETKDATVQKAGEYTDFATQKAKESKDYAVDKAKEAKDATVQKASEYKDYTAEKAKEGKDSATGKLGELKDSAADAAKRAMGYFTGTRDETKVGGTAEDTRRRTQEVRVQDKDYGTGHGGEKVVIKMEESRPGAVADAMKAAERALGGEMEEEGILRVERRREKM* | 307 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra3g0487 | 306 | MobiDBLite | consensus disorder prediction | 228 | 262 | - | - | |
| Vra3g0487 | 306 | Gene3D | - | 169 | 226 | - | - | |
| Vra3g0487 | 306 | Gene3D | - | 120 | 168 | - | - | |
| Vra3g0487 | 306 | MobiDBLite | consensus disorder prediction | 102 | 133 | - | - | |
| Vra3g0487 | 306 | PANTHER | EMBRYOGENESIS ABUNDANT PROTEIN, PUTATIVE-RELATED | 108 | 168 | - | - | |
| Vra3g0487 | 306 | PANTHER | EMBRYOGENESIS ABUNDANT PROTEIN, PUTATIVE-RELATED | 45 | 105 | - | - | |
| Vra3g0487 | 306 | PANTHER | EMBRYOGENESIS ABUNDANT PROTEIN, PUTATIVE-RELATED | 165 | 243 | - | - | |
| Vra3g0487 | 306 | PANTHER | DAUER UP-REGULATED-RELATED | 45 | 105 | - | - | |
| Vra3g0487 | 306 | PANTHER | DAUER UP-REGULATED-RELATED | 108 | 168 | - | - | |
| Vra3g0487 | 306 | PANTHER | DAUER UP-REGULATED-RELATED | 165 | 243 | - | - | |
| Vra3g0487 | 306 | Pfam | Late embryogenesis abundant protein | 167 | 210 | IPR004238 | - | |
| Vra3g0487 | 306 | Pfam | Late embryogenesis abundant protein | 134 | 177 | IPR004238 | - | |
| Vra3g0487 | 306 | Pfam | Late embryogenesis abundant protein | 123 | 154 | IPR004238 | - | |
| Vra3g0487 | 306 | MobiDBLite | consensus disorder prediction | 233 | 262 | - | - | |
| Vra3g0487 | 306 | MobiDBLite | consensus disorder prediction | 162 | 181 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra3g0487 | Vra-Chr3 | 5538550 | 5539819 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra3g0487 | - | - | pvu:PHAVU_001G184600g | 464.536 |