Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0486 ATGGGTACTTCTGTTACATGGGGCTCAGGGCCATCTTCATCCACCAAGCTCTTTCTGTTCATGCTTCCTCTCGTGCTTGTTGCAGGGCTGGTTTCTGTTTTGGGTCCTAGCCCCTCTAGTTGGTTTTCCACTGCCAAGCCACCGCTGTTATTATTCAGCTCTGTTACTTCCTCAGCTGCTAGTAGTGGTGCTGTCACCACCCCTTCTGAGGTGAAGCAGAGAGAAGAGTTGCTGGTGGTGGCCGTGGATAATCGTGCTGGAGAGAATCTTATCTCCGATGACACTCACTTCAATCTCTCCTCTACTCCTCCATTTTCTGTTCAGGCCATACAACAACATAGCAGGGATGAACAAAACGTTCCCCAAAATTTGGGTAACGTGAGTTCGGTGAACGAGTCTTATGTTCCAGCAGAAAGGCCAAAACTGCAAAGAAAATTCAGCATCTTAGACAGAAATGAAGCAGGTCTAATAAAAGCTCGAGCCGCAATTAGAGAAGCAAGAAACGGAAATCAAACGCAAGATACAGACTACGTTCCTATTGGACCAATGTACATGAATGCCAATGCATTTCACAGGAGTTACTTGGAAATGGAGAAACAGCTGAAAGTGTATGTGTACGAAGAAGGGGAGGCTCCAGTTTTTCATAACGGACCTTGCAAGAGCATATACTCGATGGAGGGGAATTTCATCCATGCTATTGAGATGAACGAGAAATTCCGAACAAGAGATCCTGAGAAAGCACATGTTTTTTTCTTACCTTTTAGTGTAGCAATGTTGGTCCAATTCGTGTATGTACGAGACTCTCATGACTTTGGCCCCATAAAAAAAACTGTCACGGATTACATCGACGTCATCGCAGGAAGATACCCCTATTGGAACAGAAGCCTTGGAGCTGATCATTTCTATCTTGCTTGCCACGATTGGGGGCCAGAGACTTCGCGCTCGGTTCCTAATTTGAAAGATAATTCGATACGCGTGTTGTGCAATGCTAACACTTCCGAGGGATTCAAGCCTTCGAAGGATGTCTCTTTGCCGGAAATTAACCTCCAAAGTGGTTCCATAAACGGTTTGATCGGTGGGCCGTCTGCTTCGAAGCGTCCACTCTTGGCCTTCTTTGCCGGTGGACTTCACGGCCCAATTAGGCCGGTTCTTCTTGAACAGTGGGAAAACAAGGACGAGGACATAAAGGTTCAGAAGTACCTTCCGAAGGGTGTGTCGTACTATGAGATGCTGAGGAAGAGCAGGTTCTGTCTTTGTCCCAGTGGGTACGAGGTGGCGAGTCCGAGAGTGGTGGAGGCAATCTACACAGGGTGTGTCCCAGTTCTGATTTCGGATCACTATGTCCCTCCGTTCAGTGATGTTTTGAATTGGAAGTCGTTTTCCGTTGAAGTTACGGTTGAGGAGATTCCGAAATTGAAGGAAATTTTGTTGAGTATTTCTCCAAGACAGTATATAAGAATGCAGAGGAGAGTGGTACAAGTTAGGAGGCATTTTGAGGTGCACTCTCCTCCCAAGAGATTCGATGTCTTTCACATGATTCTTCATTCTGTATGGCTTAGAAGATTGAACTTCAGAGTCCACGATCATCAATCACAACTGTCTTAG 1605 0.4604 MGTSVTWGSGPSSSTKLFLFMLPLVLVAGLVSVLGPSPSSWFSTAKPPLLLFSSVTSSAASSGAVTTPSEVKQREELLVVAVDNRAGENLISDDTHFNLSSTPPFSVQAIQQHSRDEQNVPQNLGNVSSVNESYVPAERPKLQRKFSILDRNEAGLIKARAAIREARNGNQTQDTDYVPIGPMYMNANAFHRSYLEMEKQLKVYVYEEGEAPVFHNGPCKSIYSMEGNFIHAIEMNEKFRTRDPEKAHVFFLPFSVAMLVQFVYVRDSHDFGPIKKTVTDYIDVIAGRYPYWNRSLGADHFYLACHDWGPETSRSVPNLKDNSIRVLCNANTSEGFKPSKDVSLPEINLQSGSINGLIGGPSASKRPLLAFFAGGLHGPIRPVLLEQWENKDEDIKVQKYLPKGVSYYEMLRKSRFCLCPSGYEVASPRVVEAIYTGCVPVLISDHYVPPFSDVLNWKSFSVEVTVEEIPKLKEILLSISPRQYIRMQRRVVQVRRHFEVHSPPKRFDVFHMILHSVWLRRLNFRVHDHQSQLS* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0486 534 Pfam Exostosin family 198 477 IPR040911 -
Vra3g0486 534 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 97 527 IPR004263 GO:0006486|GO:0016757
Vra3g0486 534 PANTHER EXOSTOSIN FAMILY PROTEIN 97 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0486 Vra-Chr3 5533405 5537031 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0486 - - gmx:100806278 870.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0486 3 5533405 5537031 Vra3g0486 3 5533405 5537031 ECH