Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0485 ATGGAGAGTGGAAATTGCAGTTGCAACATAGGATATGGTATTGCTACCGGTGTAGATAGGTGGCACCCGAGCCTCCATTGCAAACCCTTCAACTCTTCCCTTTTCTTCAAACCACCACCCTCCAAACCTCTTTCCCTTTCTTTCCGCCGCAACCTCCGCCATGCCACACACTACCTACCCCCGGATTCCCACTCCCTCATCCACGCACTCCACGTCTCCTCCCGCGCCGCCGACACCCAACTCGTCAAGACCGTCCACGCCGCGCTCCTTAAACTCCACGAACACGACACTCGCCTCTTTAACGCCCTCATATCCGCTTACCTCAAACTCCGCCTCTTCCCCCACGCCCTCCGCCTCTTCCTCTCTCTGCCTTCCCCCAACGCCGTCTCGTATACAGCCCTCATCTCCGCCCTATCGAAATGGCCCAACCGCGAGCATCACGCGCTCAAGCTCTTCCTCCGCATGACGCACTCCCACCTCATCCCCAACGCGTACACATACGTCGCGGTTTTAACTGCCTGCACAAGAATTCTTCATTTCCAGTTGGGCCTCCAGGTCCACGCTGCCGCTCTCAAAACGGCCCATTTCGATTCCACCTTCGTCGCAAACGCCCTCGTTTCTCTTTACGCCAAGCACGCCCCTTTCCGGGATGCGCTTAAACTCTTTAACCAAACACGGTACAGGGACATTGCGTCGTGGAACACTATTATCTCTGCTGCGGTGCAGGAATCCATGTACGACACTGCGTTTCGGTTATTCCGCGACATGCAGACGACGGATGCTTTTCGAGTTGATGATTTCACCTTGTCGATACTTTTGTCTGCGTGTGCGTCGTTGGTGGAAGGTCAGCAAGTTCACGCGCACGCTGTTAAATTGGGTTTGGAAACTAGTTTGAACGTTGGAAATGGACTCACTGGGTTTTACACTAAGTTTGGAACGCTTGAGGATGTGGAGTGGTTGTTTGAGGAGATGAAAGTGAGGGATGTTATAACTTGGACTCAGATGGTGACCATGTATATGGAGTTTGGGTTGGTGGATTTGGCTCTGAATGTGTTTGATGAAATGTCCGAGAAGAATTCTGTGTCTTACAACGCTGTTTTGTCTGGGTTTTGTCAAAACGAGGAAGGCTTGGAGGCGCTGAAGTTGTTTGTCAAAATGGTGGAGGAGGGTTTGGAGTTGACGGATTTTAGTTTGACTAGCGGAGTAAATGCTTGTGGATTGATTGGTGATCCCGAGGTCAGCAAGCAGGTTCATGGGTTTGCGGTGAAGTTTGGGTTTGGATCAAATGCTTGTATAGAAGCGGCATTGCTTGACATGTACACGAGGTGTGGGAGGATGGTGGATGCGGAGAAGATGTTTCTGAGATGGAAGGTGGAGCAGTTTAGCTCTGTGTGCTGGACAGCCATGATATGTGGCTATGCTCGAAACGGGCAGCCAGAGGAGGCCATTTCTCTTTTCCACGTTGGTCGATTCAATGAAAAGGTGATTATGGATGAAGTTGTGGTGACTTCGATGCTTGGTCTTTGTGGAACAGTTGGCCATCATGATATGGGTAAGCAAATTCACGGTCATGTTGTTAAATGTGGTTTGGGATCTAATTTGGAAGTGGGAAATGCACTTCTTAGCATGTATTTTAAGTGTGGGGACATGGACGATGCGATGAAGGTGTTTCGTGATATGGCTTGTACAGATGTAGTTACATGGAACACTTTGATCTCGGGAAATCTTATACACAGACAGGGGGGCAGAGCATTGGAAGTATGGGTGGAAATGCAGGAGAAGAACATAAAGCCTGACCAAGTTACATTTGTATTGATAATTTCAGCTTACAGGCAAACAAACTCAAATTTCGTTGATGATTGTCGTAGTTTGTTTAACTCTATGCGAACTGTTTATCAAATTGAGCCCACATCCATGCATTATGCTTCCTTCATCAGTGTCTTGGGTCACTGGGGTTTTCTGCAAGAAGCACTAGAAACTATCAATAAAATGCCTTTCCAGCCTTCAGCTCTTGTTTGGCGCGCATTGCTTGATGCTTCCAAACAGCATCAGAATGATATGATTGGAAAATGGGCTGCTCAGAATATTCTTTCCTTCAAACCTAAAGATCCTTCAACGTTTATACTTGTTTCAAATCTGTATTCTGCATCTGGGAGATGGGATCGCTCTGACATGGTCAGAGACGAGATGAGGCAAAAAGGGATTCGCAAACACCCAGCTCAAAGTTGGATCATTTCTGAGAAGAAAATACATACATTTTATCCGAGAGATAGATCACATCCTCAGGAGAAAGACATATACAGTGGTTTGGATATTTTGATCTTGGAGTGCCTAAAAGTTGGATATGAACCTGACACGAGCTTTGTTCTCCATGAAGTAGAGGAGCATCACAAGAAATTCTTTCTATTCCATCACAGTGCTAAACTGGCAGCAACTTATGGGATACTGATGAGCAAGCCTGGAATGCCCGTTCGGATTGTAAAGAACATCCTTCTTTGTGGGGACTGCCATACATTCTTAAAATATGCATCAATTGTCACGAAAAGAGATATATTTCTGAGAGATTCTTCTGGATTTCATTGTTTCTCCGGTGGCCAGTGCTCGTGTAAAGACTGCTGGTGA 2622 0.4706 MESGNCSCNIGYGIATGVDRWHPSLHCKPFNSSLFFKPPPSKPLSLSFRRNLRHATHYLPPDSHSLIHALHVSSRAADTQLVKTVHAALLKLHEHDTRLFNALISAYLKLRLFPHALRLFLSLPSPNAVSYTALISALSKWPNREHHALKLFLRMTHSHLIPNAYTYVAVLTACTRILHFQLGLQVHAAALKTAHFDSTFVANALVSLYAKHAPFRDALKLFNQTRYRDIASWNTIISAAVQESMYDTAFRLFRDMQTTDAFRVDDFTLSILLSACASLVEGQQVHAHAVKLGLETSLNVGNGLTGFYTKFGTLEDVEWLFEEMKVRDVITWTQMVTMYMEFGLVDLALNVFDEMSEKNSVSYNAVLSGFCQNEEGLEALKLFVKMVEEGLELTDFSLTSGVNACGLIGDPEVSKQVHGFAVKFGFGSNACIEAALLDMYTRCGRMVDAEKMFLRWKVEQFSSVCWTAMICGYARNGQPEEAISLFHVGRFNEKVIMDEVVVTSMLGLCGTVGHHDMGKQIHGHVVKCGLGSNLEVGNALLSMYFKCGDMDDAMKVFRDMACTDVVTWNTLISGNLIHRQGGRALEVWVEMQEKNIKPDQVTFVLIISAYRQTNSNFVDDCRSLFNSMRTVYQIEPTSMHYASFISVLGHWGFLQEALETINKMPFQPSALVWRALLDASKQHQNDMIGKWAAQNILSFKPKDPSTFILVSNLYSASGRWDRSDMVRDEMRQKGIRKHPAQSWIISEKKIHTFYPRDRSHPQEKDIYSGLDILILECLKVGYEPDTSFVLHEVEEHHKKFFLFHHSAKLAATYGILMSKPGMPVRIVKNILLCGDCHTFLKYASIVTKRDIFLRDSSGFHCFSGGQCSCKDCW* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0485 873 Pfam PPR repeat family 564 610 IPR002885 -
Vra3g0485 873 Pfam PPR repeat family 358 405 IPR002885 -
Vra3g0485 873 Pfam PPR repeat family 229 277 IPR002885 -
Vra3g0485 873 Pfam PPR repeat family 126 174 IPR002885 -
Vra3g0485 873 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 475 859 - -
Vra3g0485 873 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 395 484 - -
Vra3g0485 873 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 41 401 - -
Vra3g0485 873 Gene3D Tetratricopeptide repeat domain 47 180 IPR011990 GO:0005515
Vra3g0485 873 Gene3D Tetratricopeptide repeat domain 181 291 IPR011990 GO:0005515
Vra3g0485 873 Pfam E motif 683 744 IPR046848 -
Vra3g0485 873 Gene3D Tetratricopeptide repeat domain 491 614 IPR011990 GO:0005515
Vra3g0485 873 Gene3D Tetratricopeptide repeat domain 615 757 IPR011990 GO:0005515
Vra3g0485 873 Pfam DYW family of nucleic acid deaminases 781 873 IPR032867 GO:0008270
Vra3g0485 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 162 IPR002885 -
Vra3g0485 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 358 IPR002885 -
Vra3g0485 873 TIGRFAM PPR: pentatricopeptide repeat domain 232 258 IPR002885 -
Vra3g0485 873 TIGRFAM PPR: pentatricopeptide repeat domain 361 394 IPR002885 -
Vra3g0485 873 TIGRFAM PPR: pentatricopeptide repeat domain 464 487 IPR002885 -
Vra3g0485 873 TIGRFAM PPR: pentatricopeptide repeat domain 566 599 IPR002885 -
Vra3g0485 873 TIGRFAM PPR: pentatricopeptide repeat domain 538 560 IPR002885 -
Vra3g0485 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 564 598 IPR002885 -
Vra3g0485 873 PANTHER OS07G0172600 PROTEIN 395 484 - -
Vra3g0485 873 PANTHER OS07G0172600 PROTEIN 475 859 - -
Vra3g0485 873 PANTHER OS07G0172600 PROTEIN 41 401 - -
Vra3g0485 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 563 IPR002885 -
Vra3g0485 873 Pfam PPR repeat 203 224 IPR002885 -
Vra3g0485 873 Pfam PPR repeat 641 664 IPR002885 -
Vra3g0485 873 Pfam PPR repeat 538 560 IPR002885 -
Vra3g0485 873 Pfam PPR repeat 100 121 IPR002885 -
Vra3g0485 873 Pfam PPR repeat 435 458 IPR002885 -
Vra3g0485 873 Pfam PPR repeat 308 328 IPR002885 -
Vra3g0485 873 Pfam PPR repeat 464 487 IPR002885 -
Vra3g0485 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Vra3g0485 873 Gene3D Tetratricopeptide repeat domain 295 423 IPR011990 GO:0005515
Vra3g0485 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Vra3g0485 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 703 737 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0485 Vra-Chr3 5521909 5525251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0485 60 873 Glycoside Hydrolase AT3G49170 34.814 7.06e-151 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0485 - - gmx:100784704 1397.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0485 3 5521909 5525251 Vra3g0485 3 5521909 5525251 ECH