Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0484 ATGGACGCACCTCGTAAGCAGCAGGTGTCGCTGAGAGGAGCAAGTGCGAAGGAGATAACGCGAGACGCTCTTCTTCAGAAGGTCACTCAGGAAAGAGAACTTCGCAATTATGCAAAACGAGCTGCTGCTGCTGCTCTCTTCATTCAGAGAGTGTGGAGGCGCTTCAAGGTCACAAAGGCAATTTCTCTGCAACTTCAGCAAGAGTGGGAGATAGCAGTGAATCATTATACTGGTGTAATGACAGCAGATTGGATTTCAAACAATTTGTTGAGACCATTTCTGTTCTTTATTACCCTTATCTCCACTCAACGTCAGAAGGTCAACTGCAAGAGAATAGATTCTATCAAACTGTGCTTTACCGTCATATTGGAAAGCCTGAAATCTTCTGATTCAAAGCTGAACTTTTGCTTTTTGGCAATTGGTACAACTGAAGAAAGAAGAATATGGAGATACCAGGCACGCAAGCTGACTTTTCTTAGTTTTGTTATTCTTTCAGAGTTCAGTAAACACCCTTCCGGGGCCCAAGATATTACTGTTGTTACATCTCTCGCCATGCGTATTCTTGTAATGTTAACTGATATGAAAGGATGGAAAGGAATAACAAATGACAACCACTTTGATGCAGATTTAGCAGTGAAAGATTTAATTCAGTTCATGGGCAGTGATAAAAGTGGTTGTTATGTGTCTATTGGCAGATATATTAGTGCATTAGAAAATCCTTCTTCCCAGTCAAAGATCATCACCCCGGCAGATGGAAATTTTTTCATTACTGCAAGTGTAATAACTTTAGCTGTACGGCCGTTTTATCTGATAAACTATGATGCAGAAGTGCCTCATACGCTGGATTTCAACCATGCTGCTGAGCAGTATATTCTTTATCTGCTGACCATACCTTGGCTAGTGCAACATCTCCCCCTTATTCTTCTACCAGCTTTAAAGCACAAATCTATTTTGTTTCCATGCTTCCAGACTCTATTGATTTTGAAAGAGAAAGTTTTGATGGAGATGTCAGAGTTCGTGAAATCAGAGATTGCTGTCTCTTTCAAGGCTATTCCACCAGTTGGTTGGGCCCTTGCTAACATTATCTGCTTAGCAACAATGAATGAGAATGAATCCTTCAATGAAGGTTTAGACCATGGATTGTATGTCCATGTTGTTATTACTCTATCAGAGGCTCTGCTGTCTTGTCTTGATAATATTGGATGGGTCAGAAAGAAAAAGAAAGCCCTTCAAACTGATGAAAGTTCAATACACCCAGTTGATGCAGTTCAGCACGAGGGTGAAGCGACCAATGAATCCTTAATATTGTCATACATGGATCAATTTAGGCCTGTTTGTCAGCAGTGGCATCTCAAAATTCTTTTGGCATCAATTAATAGAGATTCCATAAACAAGGCTGAGACTGTGCCATCAAGTAGCCTAGAATGTCTGGGAAATCTAGAATTGTGTGATGTTGCACTTTTTTATTCTAATGTACTTAGGATATTTTCAGTCTTGAGTCCAATTCGTGGCTCATTATCAGTTCTCAACACGCTATCATTCACTCCTGGATTTCTTGTGAGATTGTGGAGTGTACTGGAGGGTTCCTTTTTTTCAGGAGACAAACATAATTTTGATAATTACATAAGTGAAAAAAGCAAACATAAAGCCTTTGAGAAGATGCAAAAACAAGTCAGTAAAGATGGGCCTAATAAGTGGGTCAATGTACTTCATAAATTTGCAGGTAGGTCACGAGCAGCAACAGATTGCACTGACTTTAATAGCAGTCACACTGAGCCTAGCAGACCAAATGACGATTCATCAGATATATGGGACATAGAACCTATGAGGAATGGGCCGCAAGGCATTCCAAAGGATATGTTTGCTATGCTTCATCTTTTCTGTGCGACCTATTCTCACCTGCTTTTAGTTCTTGATGACATAGAGTTCTATGAGAAACAGGTTCCATTCCAAATAGAGCAGCAAAGAAAAATTGCATCTATGCTCAATACATTGGTTTATAATGGCTTGTCCCATGTTGGTGGTCATCATAACAAGTCCCTAATGGATTGTGCTATCAGATGCTTACATTTACTGTATGAAAGGGATTGCAGGCACCCATTTTGTCCTCCTGATTTGTGGCTTTCTCCTGCTAGAAAAAGCCGGCCACCAATTGCTGTTGCTGCCAGAACTCATGAAGTTTTAGCAGCCAACCTGATACATGATGATTCATCAGCTTCACTGAGTGTTGGTTCTGCTGTCACTATTGTTCCTCACGTTTTCCCTTTTGAGGAGAGAGTTGAGATGTTTCGTGAATTCATCAAGATGGATAAAGCAGCTCGAAAAATGGCCGGTGAAATTTCTGAACCTGGTTCACGAGCCATTGAGATAGTAGTACGTCGGGGTCATATTGTTGAAGATGGATTTCGGCAATTAAATTCCCTTGGGTCAAGGTTGAAGTCATCCATCCATGTATCATTTGTTAGTGAATGTGGTCTTCTTGAGGCTGGCCTGGACTATGGTGGGTTATCTAAAGAGTTTCTGACTGACTTATCAAAAGCAGCATTTGCTCCTGAATATGGACTATTTTCCCAAACCTCAACTTCAGACAGGCTTCTAATTCCAACTGCTTCTGCCAGATATTTGGAGAATGGTCTTCAGATGATTGAATTCCTTGGACGAGTAGTCGGGAAAGCTCTATATGAAGGAATATTACTTGATTACTCTTTCTCCCATGTTTTTGTACAAAAGCTTTTGGGACGATATAGTTTTCTTGATGAATTATCAACACTTGATCCAGAGCTATACAGGAATCTTATGTATGTCAAGAATTATGACGGTGATATCACGGAGCTCTGTCTTGATTTCACAGTTACTGAAGAATCATTGGGTAAAAGGTATGTGGTTGAACTTAAGTCTGGTGGCAAAGATATTTCTGTAACGAATGAGAACAAGATGCAGTACATGCATGCAATGGCAGACTACAAACTCAACCAACAGATGTTGCCCTTTTCAAATGCGTTTTATAGAGGGTTAACTGATCTTATATGTCCATCCTGGTTGAAGTTATTCAATGCTAGTGAATTTAATCAGTTGCTTTCAGGTGGCAATTATGATATTGATGTTGATGATCTGAAAAATAACACTCGATATACTGGTGGTTACAATGAGGGAAGCCGGACAATCAAGATATTTTGGGAGGTGATTAAAGGATTTGAACCTCAAGAGCGTTGTCTGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCTCCATTACTCGGGTTCAAATACTTGCAGCCACCACTAACCATCCACAAGGTTGTTTGTGATGTTCCTCTTTGGGCAACAATTGGAGGACAGGATGTAGATCGGCTTCCATCAGCTTCAACCTGCTACAATACACTTAAGCTTCCGACATACAAACGGCCAGGCACCTTGAGAGCAAAGCTTCTATATGCTATAAGTTCAAATGCCGGATTTGAACTTTCTTGA 3471 0.4039 MDAPRKQQVSLRGASAKEITRDALLQKVTQERELRNYAKRAAAAALFIQRVWRRFKVTKAISLQLQQEWEIAVNHYTGVMTADWISNNLLRPFLFFITLISTQRQKVNCKRIDSIKLCFTVILESLKSSDSKLNFCFLAIGTTEERRIWRYQARKLTFLSFVILSEFSKHPSGAQDITVVTSLAMRILVMLTDMKGWKGITNDNHFDADLAVKDLIQFMGSDKSGCYVSIGRYISALENPSSQSKIITPADGNFFITASVITLAVRPFYLINYDAEVPHTLDFNHAAEQYILYLLTIPWLVQHLPLILLPALKHKSILFPCFQTLLILKEKVLMEMSEFVKSEIAVSFKAIPPVGWALANIICLATMNENESFNEGLDHGLYVHVVITLSEALLSCLDNIGWVRKKKKALQTDESSIHPVDAVQHEGEATNESLILSYMDQFRPVCQQWHLKILLASINRDSINKAETVPSSSLECLGNLELCDVALFYSNVLRIFSVLSPIRGSLSVLNTLSFTPGFLVRLWSVLEGSFFSGDKHNFDNYISEKSKHKAFEKMQKQVSKDGPNKWVNVLHKFAGRSRAATDCTDFNSSHTEPSRPNDDSSDIWDIEPMRNGPQGIPKDMFAMLHLFCATYSHLLLVLDDIEFYEKQVPFQIEQQRKIASMLNTLVYNGLSHVGGHHNKSLMDCAIRCLHLLYERDCRHPFCPPDLWLSPARKSRPPIAVAARTHEVLAANLIHDDSSASLSVGSAVTIVPHVFPFEERVEMFREFIKMDKAARKMAGEISEPGSRAIEIVVRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLLEAGLDYGGLSKEFLTDLSKAAFAPEYGLFSQTSTSDRLLIPTASARYLENGLQMIEFLGRVVGKALYEGILLDYSFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKNYDGDITELCLDFTVTEESLGKRYVVELKSGGKDISVTNENKMQYMHAMADYKLNQQMLPFSNAFYRGLTDLICPSWLKLFNASEFNQLLSGGNYDIDVDDLKNNTRYTGGYNEGSRTIKIFWEVIKGFEPQERCLLLKFVTSCSRAPLLGFKYLQPPLTIHKVVCDVPLWATIGGQDVDRLPSASTCYNTLKLPTYKRPGTLRAKLLYAISSNAGFELS* 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0484 1156 SMART hect_3 806 1156 IPR000569 GO:0004842
Vra3g0484 1156 SUPERFAMILY Hect, E3 ligase catalytic domain 788 1149 IPR035983 GO:0004842
Vra3g0484 1156 Gene3D Hect, E3 ligase catalytic domain 1031 1155 - -
Vra3g0484 1156 ProSiteProfiles HECT domain profile. 812 1156 IPR000569 GO:0004842
Vra3g0484 1156 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 3 1156 IPR044611 GO:0000209|GO:0061630
Vra3g0484 1156 MobiDBLite consensus disorder prediction 582 603 - -
Vra3g0484 1156 CDD HECTc 788 1154 IPR000569 GO:0004842
Vra3g0484 1156 Pfam HECT-domain (ubiquitin-transferase) 843 1156 IPR000569 GO:0004842
Vra3g0484 1156 Gene3D Hect, E3 ligase catalytic domain 914 993 - -
Vra3g0484 1156 Gene3D Hect, E3 ligase catalytic domains 790 1028 - -
Vra3g0484 1156 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 3 1156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0484 Vra-Chr3 5510899 5521724 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0484 K10588 - gmx:100527169 2032.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0484 3 5510899 5521724 Vra3g0484 3 5510899 5521724 ECH