Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0479 ATGCGGGCCTCCGTTTGCCTGTGGCTCGCGTTAGCTACCGTCGCGTTGTCTGCGGCGCTGGTGCACGGCGGTTTGACGGGGACATTTCTTCCTCTGGAACGGGCCATTCCTCTGAACCAACGAGTGGAGTTAGAGTCGCTGAGAGCTCGAGACAGAGCACGCCACAGTCGAATCTTGCAAGGTGTCTTTGGTGGCGTTGTCGACTTCGCCGTCCAGGGAACCTCCGATCCTTACTTCGTTGGGTACGGGCTCTATTTCACGAAAGTGAAGTTGGGATCGCCTGCGAAAGAGTTTTACGTTCAGATTGATACTGGAAGTGACATATTGTGGCTGAATTGCATGACTTGCAGTAATTGTCCTCAATCTAGTGGGTTAGGGATTCAGCTGGATTTCTTTGACACGGCCGGCTCATCCACTGCTGCGTTTGTTTCCTGCGCTGATCCAATATGTTCTTATGCGGTTCGAACTGCGACAAGTGAATGCTCTTCTCAGGCTGATCATTGCAGCTACACTTTTCAGTATGGGGATGGAAGTGGGACAACTGGTTATTATGTTTCTGATACGATGTATTTTGACACAGTCGTGGGACAGGAATTGGTTTCTAACTCTTCATCTACCATCGTTTTTGGGTGTAGCACCTACCAGTCTGGGGATTTGACCAAAACAGATAAAGCAGTTGATGGAATTTTTGGGTTTGGTCCTGGTGCTCTATCTGTTATATCACAATTGTCATCACAGGGTCTGACACCCAAAGCGTTCTCTCATTGCCTAAAAGGACAAGACAATGGAGGAGGTGTGTTAGTTCTCGGTGAAATTTTGGAGCCAAGTATGGTTTATAGCCCACTTGTCCCATCACAGCCTCATTACAACTTAAATCTTCAGAGCATTGCTGTTAATGGTCAAATTCTCCCAATTGATTCAGATGTATTTGCGACAGCTAATAATCGAGGAACTATAGTTGACACTGGAACGACATTGACATACCTTGTTCAAGAAGCATACAATCCTTTTGTCGATGCTATAACTGCTGCTGTGTCACAGTTCTACAAACCTATTATTTCAAAAGGAAACCAGTGTTATCTGGTATCAAACAGCGTAGGTGATATATTTCCTCAAGTCAGTTTAAACTTCATGGGTGGGGCATCTATGATTTTAGATCCAGAACATTACCTTATGCATTATGGTTTCCTTGATGGTGCTGCAATGTGGTGCATTGGCTTCCAAAGAACGGACCAGAGATTCACCATTTTAGGAGATCTTGTCCTAAAAGATAAGATATTTGTATACGACTTAGCTAATCAACGAATTGGATGGGCCAACTATGACTGTTCCTTGGCGGTAAACGTCTCTATGGCTACGAGCAAGAGCAAAGATGCATACATCAACAATTCAGGACCCATGAGTGTGAGCTGCCCCCACATAGGCACTTTCTCCAAGTTGCTAGCATCAGGCATTGCTGCTTTCCTTGTGCACATAGTTTTCATGGATTTCCCAGTTTTGTAA 1503 0.4524 MRASVCLWLALATVALSAALVHGGLTGTFLPLERAIPLNQRVELESLRARDRARHSRILQGVFGGVVDFAVQGTSDPYFVGYGLYFTKVKLGSPAKEFYVQIDTGSDILWLNCMTCSNCPQSSGLGIQLDFFDTAGSSTAAFVSCADPICSYAVRTATSECSSQADHCSYTFQYGDGSGTTGYYVSDTMYFDTVVGQELVSNSSSTIVFGCSTYQSGDLTKTDKAVDGIFGFGPGALSVISQLSSQGLTPKAFSHCLKGQDNGGGVLVLGEILEPSMVYSPLVPSQPHYNLNLQSIAVNGQILPIDSDVFATANNRGTIVDTGTTLTYLVQEAYNPFVDAITAAVSQFYKPIISKGNQCYLVSNSVGDIFPQVSLNFMGGASMILDPEHYLMHYGFLDGAAMWCIGFQRTDQRFTILGDLVLKDKIFVYDLANQRIGWANYDCSLAVNVSMATSKSKDAYINNSGPMSVSCPHIGTFSKLLASGIAAFLVHIVFMDFPVL* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0479 500 Pfam Xylanase inhibitor C-terminal 288 439 IPR032799 -
Vra3g0479 500 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 462 - -
Vra3g0479 500 CDD pepsin_A_like_plant 85 443 IPR034161 -
Vra3g0479 500 PANTHER ASPARTYL PROTEASES 5 462 IPR001461 GO:0004190|GO:0006508
Vra3g0479 500 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Vra3g0479 500 PRINTS Pepsin (A1) aspartic protease family signature 318 329 IPR001461 GO:0004190|GO:0006508
Vra3g0479 500 PRINTS Pepsin (A1) aspartic protease family signature 415 430 IPR001461 GO:0004190|GO:0006508
Vra3g0479 500 ProSiteProfiles Peptidase family A1 domain profile. 85 439 IPR033121 -
Vra3g0479 500 SUPERFAMILY Acid proteases 80 445 IPR021109 -
Vra3g0479 500 Gene3D Acid Proteases 68 271 IPR021109 -
Vra3g0479 500 Pfam Xylanase inhibitor N-terminal 85 270 IPR032861 -
Vra3g0479 500 Gene3D Acid Proteases 272 449 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0479 Vra-Chr3 5472420 5478844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0479 83 444 Miscellaneous Gene Families AT1G44130 27.083 1.23e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0479 - - gmx:100804147 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0479 3 5472420 5478844 Vra3g0479 3 5472420 5478844 ECH