Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0478 ATGAAGATCCTCCAGAAAGATTTCGCCATCAATCAAACCGGAACTGCGAAGCTCATGGCTGAAGAACCCGACGACGTGTGGGTCCTCTACAACCTCATCCTCCCCGGTGACGTCGTTTCAGCCGACACCACGCGCAAGGTTCACCACGATTCCTCCACCAAGAAAAACACAGCATCACGTGTCAAGCTCACCCTCCACCTCAAAGTCACGTGCCGAGACTTCCACAAAGACTCCTCCACCCTCCGCCTCCAAGGCCGCAACCTCCACCACAACCAACACGTCGCCGCAGGCTCCTTCCACACCCTCTCCCTCGAACCCAACAAACCCTTCCTCCTCCGGAAAAATCTCTGGCAAAACGACGCCGTCCAAACCCTCAACGACACCACCCGAAAAGAACGTACCAAATCAAATTCCACTTCCATTCCCGACCTTGCTGTCGTTCTTTTCCACCCGCACCGCGCCGAGATCCACCTCGTCGCAGAAGGAGACAATACGCACTGCACCAAGGTCGAAGCCTGTCCCAACTCCAGGAAAAACGGAAAAGTTTCTTCGTCCGTGTTTTTCCGCCGAGTGTTGGCGGCTTTGGTGAAGCGCGTGGATTTCAAGGTTTTGAGGGGCGTTGTGGTGACGAGCGAGGAGTTTCGTGCGTTTGTGGTGTCGGAAGCGAGGAAGATGGGGATACGGTGGATCGAGGATAACAAGACGAGCGTGGCGGTCGTGGAGGATGGTGATAGTTTGGAGAAAGTTTTGAGTGATCCGGCGGTGACGGGGTTGGTGAAGGACAGCAGGGTTATGGCGTTTAGGGAGTTGTGGGAGATGGTGTGCAACGATTCGGGCCGCGCGTGTTATGGAGCCGAGGAGGTGGAGCGTGCGAAAGAAATGAAAGCGATTGAGACACTTTTGATTACTGATGATCTTTACAGGAACGAGGAAGTTGGTACGAGGCAGAGGTACGATGGTCTGGTGAAATCGGTGAAAGACGGTGGAGGAAAGGCTTTGGTGTATTCGCCGATGCATGTTTCGGCGTCGCAACTCTCGCAGCTCACCGGCGTTGCCGCCATTCTCCGGTTTCCTTTGCCTGATCTCGAAGTCCAAGATTGA 1101 0.5468 MKILQKDFAINQTGTAKLMAEEPDDVWVLYNLILPGDVVSADTTRKVHHDSSTKKNTASRVKLTLHLKVTCRDFHKDSSTLRLQGRNLHHNQHVAAGSFHTLSLEPNKPFLLRKNLWQNDAVQTLNDTTRKERTKSNSTSIPDLAVVLFHPHRAEIHLVAEGDNTHCTKVEACPNSRKNGKVSSSVFFRRVLAALVKRVDFKVLRGVVVTSEEFRAFVVSEARKMGIRWIEDNKTSVAVVEDGDSLEKVLSDPAVTGLVKDSRVMAFRELWEMVCNDSGRACYGAEEVERAKEMKAIETLLITDDLYRNEEVGTRQRYDGLVKSVKDGGGKALVYSPMHVSASQLSQLTGVAAILRFPLPDLEVQD* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0478 366 SUPERFAMILY Translational machinery components 142 263 - -
Vra3g0478 366 Gene3D Pelota, domain A 1 131 IPR038069 -
Vra3g0478 366 Gene3D eRF1 domain 2 142 259 IPR042226 -
Vra3g0478 366 PANTHER PELOTA 1 363 IPR004405 GO:0070481|GO:0070966|GO:0071025
Vra3g0478 366 Pfam eRF1 domain 1 1 127 IPR005140 -
Vra3g0478 366 SUPERFAMILY L30e-like 266 363 IPR029064 -
Vra3g0478 366 SUPERFAMILY Dom34/Pelota N-terminal domain-like 1 128 IPR038069 -
Vra3g0478 366 Pfam eRF1 domain 3 267 359 IPR005142 -
Vra3g0478 366 Gene3D - 260 366 IPR029064 -
Vra3g0478 366 SMART eRF1_1_2 1 130 IPR005140 -
Vra3g0478 366 PANTHER EUKARYOTIC RELEASE FACTOR 1 (ERF1) FAMILY PROTEIN 1 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0478 Vra-Chr3 5468229 5470154 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0478 K06965 - gmx:100803618 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0478 3 5468229 5470154 Vra3g0478 3 5468229 5470154 ECH