Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0473 ATGTCGCCTGCAATGGCACTAAATGAGCAGAGGAGCAAGGATGATGCAGCAGAAGAACAAATTGAATATGAGAAAGGAGTGAAGCATCTGTGTGAGAAAGGTCATATTCGTGCGGTACCTAAGAAGTACATACTTCCTGTTGCTGACAGACCCACCAAGACTGTGAAAGATTCGAATGTTTTGAACCAAAATCTTCAGTTACCCATCATTGATTTTGCCGAATTGCTTGGTCCAAACAGGTCACAAGTCCTTCAATCCCTAGCCAATGCTTGTCAACAGTATGGATTTTTCCAGCTGGTAAATCATTGCATCTCGGATGATATTGTGAGGAGCATGATAGATGTGAGTGGAAGGTTCTTTGATCTGCCTTTGGAGGAGAGAGATAAGTACATGACAACTGATATGGGAGCACCGGTTCGATGTGGGACCAGTTTCAGTCAAACCAAAGACAGTGTGTTGTGTTGGAGGGATTTCTTGAAACTCCTGTGCCATCCCTTACCAGATTTCCTCCCCCATTGGCCTGTTTCACCACTGGACTTTCGGAAAGTGGTTGGCAGCTACGCAGAAGAAACCAGACAATTGTTTCTGGTGGTAATGGAAGCGATCCTAGAGAGCTTGGGAATAATGGAAAAGGAGGAAAAAAGGAGTGTTATGGAAGAGTTTGAAAATGGGAGTCAAATGATGGTGGCGAATTTCTACCCACGATGTCCTGAACCGGAGCTTACCTTGGGTATACCCCCTCATTCTGACTATGGCTTCCTCACACTTCTTGTGCAAGACGAGGTAGAAGGCTTGCAAGTTCAGTACCAAGACAAATGGGTCACCGTTCAACCCATTCCCAATGCCTTTGTAATCAACGTCGGTGATCACTTAGAGATATATAGCAACGGAAAATACAAGAGCATATTGCATAGAGTTATAGTGAATGAAGTTAAGAGTAGAGTATCGGTGGCTTCGCTTCATAGCCTTCCATTTAACACCACAGTGAAACCGTCGCCAAAACTCGTTGATGAAGACAATCCCAAGCGTTACATGGACACAGATTTTGCCACTTTTCTTGCCTACGTATCTTCCCAAGAGCCAAATAAAAAGGATTTTCTCGACTCAAGAAAATTGCTATGA 1122 0.4394 MSPAMALNEQRSKDDAAEEQIEYEKGVKHLCEKGHIRAVPKKYILPVADRPTKTVKDSNVLNQNLQLPIIDFAELLGPNRSQVLQSLANACQQYGFFQLVNHCISDDIVRSMIDVSGRFFDLPLEERDKYMTTDMGAPVRCGTSFSQTKDSVLCWRDFLKLLCHPLPDFLPHWPVSPLDFRKVVGSYAEETRQLFLVVMEAILESLGIMEKEEKRSVMEEFENGSQMMVANFYPRCPEPELTLGIPPHSDYGFLTLLVQDEVEGLQVQYQDKWVTVQPIPNAFVINVGDHLEIYSNGKYKSILHRVIVNEVKSRVSVASLHSLPFNTTVKPSPKLVDEDNPKRYMDTDFATFLAYVSSQEPNKKDFLDSRKLL* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0473 373 PANTHER LEUCOANTHOCYANIDIN DIOXYGENASE-LIKE PROTEIN 17 371 - -
Vra3g0473 373 SUPERFAMILY Clavaminate synthase-like 27 359 - -
Vra3g0473 373 Pfam 2OG-Fe(II) oxygenase superfamily 226 321 IPR044861 -
Vra3g0473 373 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 223 323 IPR005123 -
Vra3g0473 373 Pfam non-haem dioxygenase in morphine synthesis N-terminal 67 165 IPR026992 -
Vra3g0473 373 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 17 371 - -
Vra3g0473 373 Gene3D - 16 355 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0473 Vra-Chr3 5434768 5438248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0473 24 347 Glycosyltransferase AT5G59530 35.135 1.42e-49 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0473 - - vun:114179327 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0473 3 5434768 5438248 Vra3g0473 3 5434768 5438248 ECH