Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0459 ATGGCTTTCCCCTGGGGAGCCCTCCTAACCACAACATTGGTCTTTCTTGTTGCATTCTCACTTCCTAATGTCCATGCTGCTGAAAACAACACCAACAAATATAACAAGATTGGCCAACTCAGAAAGCATCGACCAGCTTTTGCGCCTACTGGATGGAAGAAAGCTCAAGCTACCTTCTACGATGGAGACTCTAAATCATTTGGTGGAGCTTGTGGGTACGATGATGTGGTTAAGGAGGGCTACGGCCTAGACACGATAGCAGTGAGTTCAGTTTTGTTTAAGGATGGTCTGTCATGTGGGTCATGTTACGAGATAAAATGCACAGATTCTAGTAAGGGATGTAAGACAAGGAAATCCCCTGTTTTGGTGACGGCAACAAACGCCTGCCATGGGTGCAGCTCCGAACACTTAGATTTGGCCAAACCTGCATTTGTGAAAATTGCAGAGCAGAAGGCTGGCATGGTCCCAATCCTTTATCGCAGGGTAGGGTGCAAGAAGAAGGGAGGGATTCGATTCACAATCACTGGGAATCCTCATTTTAATATAGTATCAGTGGGGAATGTTGGAGGAGCTGGAGACGTCACACAAGTGCAGGTGAAGGGTGATAAGAAAATCAAGCACTGGACAAATTTGAAGCGAAGTTGGGGTCAAAAATGGCAAACTGATGTGATGTTACAGGGAGAGACATTGTCTTTTAAGGTCAGAACTGGTGATGGCAGGCACTCTATCTCTCCCAAGGTTGCTCCTAGTGGTTGGAAATTTGGTCAAACGTTTGAAGGCAAGAACTTCGTTAATTAG 798 0.4574 MAFPWGALLTTTLVFLVAFSLPNVHAAENNTNKYNKIGQLRKHRPAFAPTGWKKAQATFYDGDSKSFGGACGYDDVVKEGYGLDTIAVSSVLFKDGLSCGSCYEIKCTDSSKGCKTRKSPVLVTATNACHGCSSEHLDLAKPAFVKIAEQKAGMVPILYRRVGCKKKGGIRFTITGNPHFNIVSVGNVGGAGDVTQVQVKGDKKIKHWTNLKRSWGQKWQTDVMLQGETLSFKVRTGDGRHSISPKVAPSGWKFGQTFEGKNFVN* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0459 265 PRINTS Expansin/Lol pI family signature 51 66 IPR007118 GO:0005576
Vra3g0459 265 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
Vra3g0459 265 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Vra3g0459 265 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576
Vra3g0459 265 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576
Vra3g0459 265 Gene3D - 167 263 IPR036749 -
Vra3g0459 265 PRINTS Expansin signature 80 94 IPR002963 GO:0009664
Vra3g0459 265 PRINTS Expansin signature 127 144 IPR002963 GO:0009664
Vra3g0459 265 PRINTS Expansin signature 144 157 IPR002963 GO:0009664
Vra3g0459 265 PRINTS Expansin signature 168 180 IPR002963 GO:0009664
Vra3g0459 265 PRINTS Expansin signature 180 201 IPR002963 GO:0009664
Vra3g0459 265 PRINTS Expansin signature 217 238 IPR002963 GO:0009664
Vra3g0459 265 PRINTS Expansin signature 246 262 IPR002963 GO:0009664
Vra3g0459 265 Pfam Expansin C-terminal domain 170 249 IPR007117 -
Vra3g0459 265 Gene3D - 38 165 IPR036908 -
Vra3g0459 265 SUPERFAMILY Barwin-like endoglucanases 51 186 IPR036908 -
Vra3g0459 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 260 IPR007117 -
Vra3g0459 265 SMART dpbb_1 85 159 IPR007112 -
Vra3g0459 265 PANTHER EXPANSIN-A15 11 263 IPR002963 GO:0009664
Vra3g0459 265 Pfam Lytic transglycolase 86 159 IPR009009 -
Vra3g0459 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 68 169 IPR007112 -
Vra3g0459 265 SUPERFAMILY PHL pollen allergen 166 260 IPR036749 -
Vra3g0459 265 PANTHER EXPANSIN-A32 11 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0459 Vra-Chr3 5287307 5288605 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0459 52 263 Miscellaneous Gene Families AT5G02260 50.661 6.52e-77 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0459 - - var:108322385 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0459 3 5287307 5288605 Vra3g0459 3 5287307 5288605 ECH