Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0456 ATGTCTGGCCCCGTGGCCATAGCAGATTATTCAAATGGAGGAGCACTTTCTTTAAAAGAGAGAACGAAATCTGTTGATGTGCTTGATGAATTAGACCAACCTTCTACGCTGACAAACGGTGAAAGTGATGGCTTTACTGTTGGGCAACTCTTACTCTCTAATGGAGAGTCATATTCTGGGTCCCTTTATGGCAATGTTTCTGAGGGCTATGGGACATACACTTGGTGTGATGGTTGTGTATATGAGGGTGAATGGAGGAGAGGGATGAGAAATGGTTATGGGAAGATAAGATGGCCTTCTGGAGCAGTGTATGAAGGTGATTTCTCCGGTGGATATATCCATGGCACGGGGACATATATTCGTTCTGATAAATTGACCTATAAAGGTAGATGGCGGTTGAATCTTAAACATGGTTTGGGATATGAAGTTTATCCTAATGGAGATACCTTTGAAGGTTCTTGGATGCAAGGAACACCAGAGGGCCCTGGCAAGTATACGTGGACCAATGGAAATGTTTATGTGGGGAATATGAAAGGTGGGATAATGTCTGGGAAAGGAACACTCACCTGGATAAATGGGGACTCGTACGAAGGAAACTGGTTAAATGGCATGATGCATGGATTTGGAGTTTACACTTGGAGTGATGGAGGAAGCTATGTTGGGACTTGGGCATTTGGTCTAAAAGATGGCAAAGGAACCTTTTACCCAAGAGGTAGCGGGCTTCCATCAATGCAAGAAATTTATCTCAGTGCCTTGAGAAAAAGAGGGCTATTGCCAGATTTGAGAAAACCGACGCAAGTGAGAGATGTCAAGCTACCAGAAAACCAGCTGTCAAGTCATGTTTCATCTGATAATCTTGCAAAAGGAAACCTGCTAAATCTGGAACAGTCTAATAGAAGAAATGTGTCTCTTGAAAGACGTTGGAGTCTCGAGGTGTCGATTGAGAAAGTGATTGGATATGATTCAGCATTAGGATTAGCAGATTCTGTGCCAGAAAGTAGCGACAAAGAGGTTGATACAACGATCCCAATTTTGGAACGAGAGTACATGCAAGGTGTATTGATAAGTGAGGTTGTGTTAAATAATATGTTTTCATCAATGTCTAGAAGGGCAAGGCGACTTAAAAAAAAGCTTGCCAAAGAGATTAAAAAACCTGGTGAAATAATCATTAAAGGTCACAGGAGTTATGATCTAATGCTCAGTTTGCAGCTTGGAATAAGGTATACCGTGGGCAAGATAACACCTATACCTACGCGAGAAGTAAGAATATCAGATTTTGGTACCAAAGCAAGCTTTTGGATGAATTTTCCTAAAGAAGGTTCTCAATTAACACCTACCCATCCATCAGAGGATTTTAAATGGAAAGATTACTGCCCCATGGTGTTCAGAAATTTGAGAGAATTATTCAAGATTGACGCTGCCGACTACATGATGTCCATTTGTGGAAACGATACTCTGAGGGAACTATCTTCTCCAGGGAAAAGTGGCAGTGTCTTTTTCCTGTCTCAGGATGATCGTTTCATGATCAAGACATTGCGAATGTCTGAAGTGAAGGTTCTTCTAAGAATGCTGCCAGACTATCATCATCATGTGAAGACATACGAAAATACACTTATCACAAAATTCTTTGGCTTGCACAGGATTAAGGCTTCAAGTGGTCAAAAGTTTCGCTTCGTTGTAATGGGAAATATGTTCTGCACGGAACTGAGGATCCATCGGAGATTTGATTTAAAAGGTTCTTCCTTTGGACGATCATCAGACAAGATAGAAATTGACGAAAATACAACACTAAAAGATTTGGATCTGAACTGCTGTTTCTACTTGGAACCGTCTTGGCGGGAGTCTTTATTAAAGCAGATTGAAATAGACAGCAAATTTTTAGAAGCACAACACATTATGGATTACAGCCTTCTTCTAGGTGTTCACTATCGAGCTCCACAGCATCTGCGTCCTCTCATATCATACAACCAAAGTAGAAGTGTGGATGGATTAGCAATGCTTGCAGAAGAAGATCCTCTGGAGGATGAAGCATCCTATCCACAAGGTCTTGTTCTAGTTCCTAGAGGAGCAGATGATAACAGTGTTGTTGTGGGCTCACATGTGAGGGGTAGTCGGTTGCGGGCTTCATCTGCTGGTGATGAGGAGGTGGATCTACTCTTACCTGGTACAGCAAGACTCCAAATCCAGCTTGGTGTGAACATGCCTTCAAGGGCAGAGCAGATTTCAGATAAACAAGAAAAAGCAAAGTTCCAGGAGGTGTACGATGTGGTGCTGTACCTGGGTATCATTGATATATTGCAGGACTATAACATGACCAAGAAGATTGAACATGCTTATAAATCTCTTCAGTTTGATTCATTGTCTATCTCAGCTGTGGACCCTACATTCTACTCTCGTCGTTTCCTGGAGTTTATTCAAAAAGTGTTTCCACCAAATGCAATGGCAGGTGGATAA 2454 0.4177 MSGPVAIADYSNGGALSLKERTKSVDVLDELDQPSTLTNGESDGFTVGQLLLSNGESYSGSLYGNVSEGYGTYTWCDGCVYEGEWRRGMRNGYGKIRWPSGAVYEGDFSGGYIHGTGTYIRSDKLTYKGRWRLNLKHGLGYEVYPNGDTFEGSWMQGTPEGPGKYTWTNGNVYVGNMKGGIMSGKGTLTWINGDSYEGNWLNGMMHGFGVYTWSDGGSYVGTWAFGLKDGKGTFYPRGSGLPSMQEIYLSALRKRGLLPDLRKPTQVRDVKLPENQLSSHVSSDNLAKGNLLNLEQSNRRNVSLERRWSLEVSIEKVIGYDSALGLADSVPESSDKEVDTTIPILEREYMQGVLISEVVLNNMFSSMSRRARRLKKKLAKEIKKPGEIIIKGHRSYDLMLSLQLGIRYTVGKITPIPTREVRISDFGTKASFWMNFPKEGSQLTPTHPSEDFKWKDYCPMVFRNLRELFKIDAADYMMSICGNDTLRELSSPGKSGSVFFLSQDDRFMIKTLRMSEVKVLLRMLPDYHHHVKTYENTLITKFFGLHRIKASSGQKFRFVVMGNMFCTELRIHRRFDLKGSSFGRSSDKIEIDENTTLKDLDLNCCFYLEPSWRESLLKQIEIDSKFLEAQHIMDYSLLLGVHYRAPQHLRPLISYNQSRSVDGLAMLAEEDPLEDEASYPQGLVLVPRGADDNSVVVGSHVRGSRLRASSAGDEEVDLLLPGTARLQIQLGVNMPSRAEQISDKQEKAKFQEVYDVVLYLGIIDILQDYNMTKKIEHAYKSLQFDSLSISAVDPTFYSRRFLEFIQKVFPPNAMAGG* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0456 817 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 53 180 - -
Vra3g0456 817 SUPERFAMILY SAICAR synthase-like 391 809 - -
Vra3g0456 817 Gene3D - 202 242 - -
Vra3g0456 817 Gene3D - 60 109 - -
Vra3g0456 817 Gene3D - 156 201 - -
Vra3g0456 817 Gene3D - 110 155 - -
Vra3g0456 817 SMART morn 171 192 IPR003409 -
Vra3g0456 817 SMART morn 56 77 IPR003409 -
Vra3g0456 817 SMART morn 102 123 IPR003409 -
Vra3g0456 817 SMART morn 217 238 IPR003409 -
Vra3g0456 817 SMART morn 125 146 IPR003409 -
Vra3g0456 817 SMART morn 79 100 IPR003409 -
Vra3g0456 817 SMART morn 194 215 IPR003409 -
Vra3g0456 817 SMART morn 148 169 IPR003409 -
Vra3g0456 817 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 392 809 IPR002498 GO:0016307|GO:0046488
Vra3g0456 817 Pfam MORN repeat 104 123 IPR003409 -
Vra3g0456 817 Pfam MORN repeat 173 194 IPR003409 -
Vra3g0456 817 Pfam MORN repeat 127 149 IPR003409 -
Vra3g0456 817 Pfam MORN repeat 196 217 IPR003409 -
Vra3g0456 817 Pfam MORN repeat 58 80 IPR003409 -
Vra3g0456 817 Pfam MORN repeat 219 238 IPR003409 -
Vra3g0456 817 Pfam MORN repeat 81 102 IPR003409 -
Vra3g0456 817 Pfam MORN repeat 150 172 IPR003409 -
Vra3g0456 817 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 38 813 IPR023610 -
Vra3g0456 817 Gene3D - 564 809 - -
Vra3g0456 817 PANTHER PHOSPHATIDYLINOSITOL 4-PHOSPHATE 5-KINASE 38 813 - -
Vra3g0456 817 PIRSF PIP5K_plant 13 813 IPR017163 GO:0005524|GO:0016308
Vra3g0456 817 CDD PIPKc_AtPIP5K_like 395 808 - -
Vra3g0456 817 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 167 236 - -
Vra3g0456 817 SMART PIPK_2 422 810 IPR002498 GO:0016307|GO:0046488
Vra3g0456 817 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 381 563 IPR027484 -
Vra3g0456 817 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 481 807 IPR002498 GO:0016307|GO:0046488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0456 Vra-Chr3 5249225 5254897 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0456 14 812 Acyl Lipid Metabolism Gene Families AT3G09920 72.750 0.0 1194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0456 K00889 - gmx:100800418 1476.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0456 3 5249225 5254897 Vra3g0456 3 5249225 5254897 ECH