Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0455 ATGAGTTCATCCTCCGGTCAGAGCAGTGGCTTTGATCTCTCTTTCAAGATCTTGTTGATCGGAGATTCTGGGGTGGGAAAAAGTAGCCTACTTGTCAGCTTCATTTCAAGTTCTGTTGAAGATCTTACCCCCACCATTGGTGTTGATTTTAAGATCAAAACGCTCACAGTAGGTGGAAAGAGACTGAAATTAACGATTTGGGATACTGCTGGGCAGGAAAGGTTCAGGACTCTAACCAGTTCTTACTATAGAAAAGCACAAGGAATCATTCTCGTTTATGATGTGACAAGGAGAGAAACCTTTACAAACCTATCAGAAGTGTGGTCTAAGGAAGTGGAACTCTACTCAACTAATCAGGATTGCGTGAAGATGCTAGTTGGAAACAAAGTTGATAGAGATACTGAAAGGACTGTGAGCAGAGAAGAGGGTTTAGCCCTTGCCAAAGAATTGGGGTGTTTGCTTGTTGAATGTAGTGCAAAAACTAGGGAAAATGTGGAGCAGTGCTTTGAGGAACTTGCTCTAAAGATAATGGAAGCTCCCAGTCTTTTGGAAGAAGATCAACAGCAGTTAAAAGGAGTGTTTTAA 585 0.4171 MSSSSGQSSGFDLSFKILLIGDSGVGKSSLLVSFISSSVEDLTPTIGVDFKIKTLTVGGKRLKLTIWDTAGQERFRTLTSSYYRKAQGIILVYDVTRRETFTNLSEVWSKEVELYSTNQDCVKMLVGNKVDRDTERTVSREEGLALAKELGCLLVECSAKTRENVEQCFEELALKIMEAPSLLEEDQQQLKGVF* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0455 194 SMART rho_sub_3 17 180 IPR001806 GO:0003924|GO:0005525
Vra3g0455 194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 187 IPR027417 -
Vra3g0455 194 TIGRFAM small_GTP: small GTP-binding protein domain 15 171 IPR005225 GO:0005525
Vra3g0455 194 PRINTS Transforming protein P21 ras signature 15 36 - -
Vra3g0455 194 PRINTS Transforming protein P21 ras signature 37 53 - -
Vra3g0455 194 PRINTS Transforming protein P21 ras signature 55 77 - -
Vra3g0455 194 PRINTS Transforming protein P21 ras signature 119 132 - -
Vra3g0455 194 PRINTS Transforming protein P21 ras signature 154 176 - -
Vra3g0455 194 PANTHER DRAB5-RELATED 1 190 - -
Vra3g0455 194 CDD Rab18 15 176 - -
Vra3g0455 194 SMART rab_sub_5 15 179 - -
Vra3g0455 194 ProSiteProfiles small GTPase Arf family profile. 8 177 - -
Vra3g0455 194 ProSiteProfiles small GTPase Rab1 family profile. 10 194 - -
Vra3g0455 194 Gene3D - 2 192 IPR027417 -
Vra3g0455 194 SMART arf_sub_2 1 180 - -
Vra3g0455 194 PANTHER SMALL MONOMERIC GTPASE-RELATED 1 190 - -
Vra3g0455 194 Pfam Ras family 16 177 IPR001806 GO:0003924|GO:0005525
Vra3g0455 194 SMART ran_sub_2 20 194 - -
Vra3g0455 194 ProSiteProfiles small GTPase Rho family profile. 8 179 - -
Vra3g0455 194 SMART ras_sub_4 12 179 - -
Vra3g0455 194 ProSiteProfiles small GTPase Ras family profile. 6 194 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0455 Vra-Chr3 5236477 5239713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0455 9 191 EF-hand Containing Proteins AT5G27540 28.421 1.10e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0455 K07910 - gmx:100799887 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0455 3 5236477 5239713 Vra3g0455 3 5236477 5239713 ECH