Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0436 ATGGAAACTTTCCTCTTCACCTCAGAATCTGTTAACGAAGGGCATCCGGACAAGTTGTGTGACCAGGTTTCAGATGCCATCCTGGATGCATGCTTGGAGCAAGACCCAGACAGCAAGGTGGCGTGTGAAACCTGTACAAAAACTAACATGGTTATGGTGTTTGGTGAGATAACAACCAAGGCCAATGTGAACTACGAGAAAATAGTTCGAGATACTTGCAGAGGCATTGGGTTCGTATCGGCGGATGTTGGTCTTGATGCTGACAATTGCAAAGTTCTGGTCAACATTGAGCAGCAGAGTCCTGATATTGCTCAAGGAGTTCATGGTCACTTGACCAAAAAGCCAGAGGAAATTGGTGCTGGTGACCAAGGCCACATGTTTGGTTATGCCACAGACGAAACACCAGAGCTAATGCCACTCACTCATGTGCTTGCTACTAAACTTGGTGCCAAGCTCACTGAAGTGAGAAAGAACAAAACATGTCCCTGGCTGAGGCCAGATGGTAAAACCCAAGTGACAGTTGAGTACAAGAACGATAATGGAGCCATGGTCCCTATCAGGGTCCACACAGTCCTCATCTCAACTCAGCATGATGAAACTGTCACAAATGAGCAAATTGCTGAAGATTTAAAAGAGAAAGTGATCAAACCCGTCATCCCAGCCAAATATATAGATGACAAAACTATCTTCCACCTCAACCCCTCTGGTAGGTTTGTCATTGGTGGACCACATGGAGATGCAGGACTCACTGGAAGGAAGATCATTATAGACACCTATGGTGGTTGGGGTGCTCATGGCGGCGGTGCCTTCTCTGGCAAGGACCCAACCAAGGTTGATAGGAGTGGCGCATACATTGTCAGGCAAGCAGCCAAGAGTGTGGTAGCTTCAGGACTTGCTCGACGTTGTATTGTGCAGGTTTCTTATGCAATTGGAGTCCCAGAGCCCCTTTCAGTGTTTGTGGACACATACAAAACGGGAAAGATTCCAGACAATGATATCTTGGCTCTGATCAAGGAGAAGTTTGACTTCAGGCCAGGAATGATTGCCATCAATCTTGATCTCATGAGAGGAGGCAACTGCAGGTACCTGAAAACTGCTGCTTATGGGCATTTTGGACGTGATGATCCTGATTTCACTTGGGAGATCGTGAAAATCCTCAAGCCAAATGCATAA 1173 0.4663 METFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVNYEKIVRDTCRGIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNDNGAMVPIRVHTVLISTQHDETVTNEQIAEDLKEKVIKPVIPAKYIDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDNDILALIKEKFDFRPGMIAINLDLMRGGNCRYLKTAAYGHFGRDDPDFTWEIVKILKPNA* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0436 390 ProSitePatterns S-adenosylmethionine synthase signature 2. 266 274 IPR022631 GO:0004478|GO:0006556
Vra3g0436 390 SUPERFAMILY S-adenosylmethionine synthetase 115 239 IPR022636 GO:0004478|GO:0006556
Vra3g0436 390 Pfam S-adenosylmethionine synthetase, N-terminal domain 4 101 IPR022628 GO:0004478|GO:0006556
Vra3g0436 390 Gene3D - 117 381 - -
Vra3g0436 390 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 2 1 390 - -
Vra3g0436 390 PIRSF MAT 1 389 IPR002133 GO:0004478|GO:0005524|GO:0006556
Vra3g0436 390 Pfam S-adenosylmethionine synthetase, central domain 117 238 IPR022629 GO:0004478|GO:0006556
Vra3g0436 390 SUPERFAMILY S-adenosylmethionine synthetase 3 109 IPR022636 GO:0004478|GO:0006556
Vra3g0436 390 TIGRFAM metK: methionine adenosyltransferase 5 386 IPR002133 GO:0004478|GO:0005524|GO:0006556
Vra3g0436 390 Hamap S-adenosylmethionine synthase [metK]. 2 390 IPR002133 GO:0004478|GO:0005524|GO:0006556
Vra3g0436 390 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 1 390 IPR002133 GO:0004478|GO:0005524|GO:0006556
Vra3g0436 390 CDD S-AdoMet_synt 5 381 - -
Vra3g0436 390 Pfam S-adenosylmethionine synthetase, C-terminal domain 240 381 IPR022630 GO:0004478|GO:0006556
Vra3g0436 390 Gene3D - 4 242 - -
Vra3g0436 390 SUPERFAMILY S-adenosylmethionine synthetase 240 386 IPR022636 GO:0004478|GO:0006556
Vra3g0436 390 ProSitePatterns S-adenosylmethionine synthase signature 1. 119 129 IPR022631 GO:0004478|GO:0006556
Vra3g0436 390 Gene3D - 11 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0436 Vra-Chr3 5059359 5062067 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0436 K00789 - csv:101222328 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0436 3 5059359 5062067 Vra3g0436 3 5059359 5062067 ECH
Vra8g0836 8 17349473 17351957 Vra3g0436 3 5059359 5062067 PCT