Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0432 ATGGGAGAGAAAAAAGAGAAGGCGAAGAATGAGGCCGGTAAGACGCCTGACTCGGGAGGAAAGCAGAACGACGTACTCGCCCCTGTCGTTTTGAGACTCGAAATGCATTGCGAGGGATGCGTCAAAAAGATCAAACGCGTCGTTCGCAATTTCGACGGTGTGGAAGACGTTAAGGCCGATCTATTAGGTAACAAGTTAACGGTTATTGGGAAGGTCGACTCTGCCGTAGTGCGAGATAAACTAGCGGACAAGACTAGGAAGAAGGTAGAAATTATTTCTCCTCAACCGAAGAAAGATTCCGGCGCCGCCAGTAAACCACCGGAGAAAAAGGTGGAAGAGAAAAAAACAGAAGAGAAGAAACCGGCAGATAAGAAAACCGAAGAAAAAACTCCGAAACAGAGCACGGTGGTGTTGAAGATCCGATTGCACTGTGACGGTTGCATTCAGAAAATTCGAAAGATTATTCTCAGGATCAAAGGGGTTGAATCGGTTAAAATAGAGGGAGGGAAAGACTTGGTGACGGTAAATGGCACAGTGGAGGTGAAGGAATTGGTAGCGTATCTGAACGAGAAGCTGAAGCGGAACGTTGAGGTGGTCCCGCTGAAGAAAGAGGGTGAAAACAAACAGAATAAGAAGGAAGAGAATAAGAAGGAAGAGAAGGGGAAGGAGAAGAAAGAAGGTGGCGGTGGTGGTAAGAAAGATGGTGGAGAAAAAGAAGAGGGTGTACCGAAGGTTGAGGTAAACAAAATGGAGCACTACGGGTACGTTTACCCACCTCCTCCTATGTACTGGTACGACGGATATGCACCGGGTCAAAGTAGTACTAGTGGTGGTGGTGGTGGTGGTTACACGGTGGGGGTTCATTCAGGGTATGATGGTAATTACGGGAATTACCATGACCAATACCATAATGGGTATGGGAACCAAGGGTACATGGTACAGCAACCACCCCCACCCCCGTTCTACTTGAACCCTTATCATCCTCCACCGCAGATGTTCAGTGATGAGAACCCCAATGCTTGTTTCGTGATGTGA 1035 0.4763 MGEKKEKAKNEAGKTPDSGGKQNDVLAPVVLRLEMHCEGCVKKIKRVVRNFDGVEDVKADLLGNKLTVIGKVDSAVVRDKLADKTRKKVEIISPQPKKDSGAASKPPEKKVEEKKTEEKKPADKKTEEKTPKQSTVVLKIRLHCDGCIQKIRKIILRIKGVESVKIEGGKDLVTVNGTVEVKELVAYLNEKLKRNVEVVPLKKEGENKQNKKEENKKEEKGKEKKEGGGGGKKDGGEKEEGVPKVEVNKMEHYGYVYPPPPMYWYDGYAPGQSSTSGGGGGGYTVGVHSGYDGNYGNYHDQYHNGYGNQGYMVQQPPPPPFYLNPYHPPPQMFSDENPNACFVM* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0432 344 MobiDBLite consensus disorder prediction 102 134 - -
Vra3g0432 344 CDD HMA 35 87 IPR006121 GO:0046872
Vra3g0432 344 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 1 344 IPR044594 GO:0046872
Vra3g0432 344 Pfam Heavy-metal-associated domain 139 196 IPR006121 GO:0046872
Vra3g0432 344 Pfam Heavy-metal-associated domain 31 84 IPR006121 GO:0046872
Vra3g0432 344 MobiDBLite consensus disorder prediction 88 134 - -
Vra3g0432 344 CDD HMA 142 186 IPR006121 GO:0046872
Vra3g0432 344 MobiDBLite consensus disorder prediction 1 24 - -
Vra3g0432 344 ProSiteProfiles Heavy-metal-associated domain profile. 35 68 IPR006121 GO:0046872
Vra3g0432 344 Gene3D - 26 99 - -
Vra3g0432 344 Gene3D - 132 205 - -
Vra3g0432 344 PANTHER HEAVY METAL-ASSOCIATED DOMAIN PROTEIN 1 344 - -
Vra3g0432 344 MobiDBLite consensus disorder prediction 203 243 - -
Vra3g0432 344 Coils Coil 202 223 - -
Vra3g0432 344 SUPERFAMILY HMA, heavy metal-associated domain 134 194 IPR036163 GO:0046872
Vra3g0432 344 SUPERFAMILY HMA, heavy metal-associated domain 30 83 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0432 Vra-Chr3 4992211 4994020 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0432 - - pvu:PHAVU_001G179100g 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0432 3 4992211 4994020 Vra3g0432 3 4992211 4994020 ECH