Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0416 ATGGAGACACGTTGTGAGATAACGCATTCAAAGTTCAACAGGATTTGTGTGTTCTGTGGAAGTAGCCCCGGCAAGAAGAGTAGCTATCAAGATGCTGCCATTGAGCTCGGCAATGAACTGGTCTCAAGGAACATCGATCTGGTGTATGGAGGGGGAAGCATTGGTCTAATGGGTTTAGTTTCTCAAGCTGTTCATGATGGCGGTCGCCATGTCATTGGAGTTATTCCCAAGACGCTCATGCCTCGAGAGCTAACTGGTGAAACGGTGGGAGAAGTAAAAGCTGTTGCTGATATGCACCAAAGGAAGGCAGAGATGGCCAAACATTCAGATGCCTTTATTGCCTTACCAGGTGGATATGGGACTCTAGAGGAGCTTCTTGAAGTCATAACCTGGGCACAACTTGGGATTCATGACAAGCCGGTGGGATTAGTAAATGTCGATGGATACTTTAATTCCTTGCTGTCATTTATTGACAAAGCCGTGGAAGAGGGATTTATCAGTCCAAATGCTCGTCACATAATTGTATCAGCACCAACAGCAAAGGAGTTGGTGAAGAAATTGGAGGATTACGTTCCCTGTCATGAGGGTGTTGCTTCCAAGTTGAGCTGGCAGATAGAACAGCAGCTTGCATACCCTCAAGATTATGACATGTCAAGGTAG 660 0.4606 METRCEITHSKFNRICVFCGSSPGKKSSYQDAAIELGNELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLVNVDGYFNSLLSFIDKAVEEGFISPNARHIIVSAPTAKELVKKLEDYVPCHEGVASKLSWQIEQQLAYPQDYDMSR* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0416 219 SUPERFAMILY MCP/YpsA-like 11 190 - -
Vra3g0416 219 Pfam Possible lysine decarboxylase 57 187 IPR031100 -
Vra3g0416 219 PANTHER LOG FAMILY PROTEIN YJL055W 1 219 - -
Vra3g0416 219 Gene3D - 3 189 - -
Vra3g0416 219 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 1 219 - -
Vra3g0416 219 TIGRFAM TIGR00730: TIGR00730 family protein 14 190 IPR005269 GO:0009691|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0416 Vra-Chr3 4779496 4783813 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0416 K22522 - gmx:100810030 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0416 3 4779496 4783813 Vra3g0416 3 4779496 4783813 ECH