Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0405 ATGAACACATCCAACGGCATCATGACACAGTCGTCTTCGTCGGGAGCGACACAGTCGCCGGGGCTCAAAACCTATTTCAAAACTCCCGAGGGAAGATATAAGCTTCAATACGAGAAGACTCACCCTTCCGGTCTTCTTCATTACGCCCATGGAAAAACCGTTACTCAGGTAACCCTGGCACATCTCAAGGACAAGCCTGCACCGTCTACACCAACTGCGTCGTCCTCAAGTTTCAGTGCCAGCAGTGGGGTACGGTCTGCGGCAGCTAGATTATTGGGAGGAAGCAACGGAAGCCGGGCACTTAGTTTTGTTGGAGGCAACGGTAGTAGCAAGAATAATGGAGGGAACAGTAGGATTGGTTCCATTGGAGCCTCCAGTACAAGTAGTTCAATGGCTAATCCAAATTTTGACGGGAAAGGCACGTACCTGATATTCAACGTCGGTGATGCAATTTTCATTAGCGATTTGAATTCTCAAGACAAGGACCCCATAAAGTCTATTCACTTCAGTAACTCGAATCCAGTGTGCCATGCGTTTGATCAGGATTCTAAGGATGGGCATGATTTGCTCATTGGTTTGAACTCTGGCGATGTCTACTCAGTGTCACTGAGACAGCAATTACAGGATGTTGGTAAGAAGCTTGTTGGGGCCCTGCATTACAACAAAGACGGTTCAGTTAATAACAGTCGTTGTACATGCATTGCTTGGGTGCCTGGAGGTGATGGTGCTTTTGTTGTTTCTCATTCTGATGGTAATTTGTACGTGTATGAGAAGAACAAAGATGGTGCGGGTGATTCTTCTTTTCCAGTTGTAAAAGATCAAACTCAATTTTCTGTTGCCCATGCACGTTACAGTAAGAGTAATCCAATAGCCAGATGGCATATATGCCAGGGTTCAATTAACAGTATTTCTTTCTCAATGGATGGAGCATACTTGGCAACTGTTGGACGAGATGGTTATTTGCGAGTGTTTGATTACTCAAAAGAACAACTTATCTGTGGCGGGAAAAGTTATTACGGTGCTTTGTTATGCTGTGCGTGGAGCATGGATGGAAAATATATTTTGACGGGAGGGGAAGATGATTTAGTTCAAGTTTGGAGCATGGAAGATCGGAAGGTTGTGGCATGGGGTGAGGGACATGGCTCGTGGGTCAGTGGAGTTGCTTTCGATTCATATTGGTCATCACCAAATTCAAATGACAATGGAGAGACCGTTGTGTATCGTTTTGGTTCTGTTGGTCAGGATACACAATTGCTTCTATGGGACCTAGAAATGGACGAAATCGTGGTGCCGTTGAGGCGGCCAGCTGGTGGATCTCCAACTTACAGTACTGGAAGCCAGTCATCACACTGGGACAATGTGGTCCCATTGGGTACCTTGCAACCTGCTCCGAGTATGCGGGATGTTCCAAAAATATCTCCGTTGGTTGCTCACCGTGTGCATACTGAACCGCTCTCTGGCTTGATATTTACCCAAGAATCTGTGCTCACTGCCTGTCGGGAAGGTCATATTAAAGTCTGGATGAGGCCAGGGGTTGCTGCTGACACCCAATCAACCAACTCTGAAAACTTGTTAGCCACCTCTCTCAAAGACAACAAGCCTTCACTCTCAACCAAGATCACCAATTCTCCCTACAAACAATGA 1644 0.4623 MNTSNGIMTQSSSSGATQSPGLKTYFKTPEGRYKLQYEKTHPSGLLHYAHGKTVTQVTLAHLKDKPAPSTPTASSSSFSASSGVRSAAARLLGGSNGSRALSFVGGNGSSKNNGGNSRIGSIGASSTSSSMANPNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDSKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGALHYNKDGSVNNSRCTCIAWVPGGDGAFVVSHSDGNLYVYEKNKDGAGDSSFPVVKDQTQFSVAHARYSKSNPIARWHICQGSINSISFSMDGAYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHGSWVSGVAFDSYWSSPNSNDNGETVVYRFGSVGQDTQLLLWDLEMDEIVVPLRRPAGGSPTYSTGSQSSHWDNVVPLGTLQPAPSMRDVPKISPLVAHRVHTEPLSGLIFTQESVLTACREGHIKVWMRPGVAADTQSTNSENLLATSLKDNKPSLSTKITNSPYKQ* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0405 547 MobiDBLite consensus disorder prediction 1 24 - -
Vra3g0405 547 MobiDBLite consensus disorder prediction 527 547 - -
Vra3g0405 547 Pfam WD domain, G-beta repeat 297 325 IPR001680 GO:0005515
Vra3g0405 547 Pfam WD domain, G-beta repeat 342 367 IPR001680 GO:0005515
Vra3g0405 547 MobiDBLite consensus disorder prediction 1 25 - -
Vra3g0405 547 Gene3D - 11 517 IPR015943 GO:0005515
Vra3g0405 547 ProSiteProfiles Trp-Asp (WD) repeats profile. 335 376 IPR001680 GO:0005515
Vra3g0405 547 SUPERFAMILY WD40 repeat-like 149 507 IPR036322 GO:0005515
Vra3g0405 547 SMART WD40_4 211 257 IPR001680 GO:0005515
Vra3g0405 547 SMART WD40_4 370 422 IPR001680 GO:0005515
Vra3g0405 547 SMART WD40_4 286 325 IPR001680 GO:0005515
Vra3g0405 547 SMART WD40_4 328 367 IPR001680 GO:0005515
Vra3g0405 547 SMART WD40_4 471 508 IPR001680 GO:0005515
Vra3g0405 547 PANTHER LOW QUALITY PROTEIN: WD REPEAT-CONTAINING PROTEIN 20-LIKE 2 544 - -
Vra3g0405 547 PANTHER WD REPEAT PROTEIN 2 544 - -
Vra3g0405 547 MobiDBLite consensus disorder prediction 106 130 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0405 302 429 Miscellaneous Gene Families AT5G08390 22.656 8.69e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0405 K24741 - gmx:100782580 976.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0405 3 4695680 4701627 Vra3g0405 3 4695680 4701627 ECH