Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0404 ATGGCAAAGCTTTTCTATTTCCTCCTTCTTCTCTTCATCCAAACAATTTCAGCCCAAGTAGCACCGACACCAGCAGGACCCACTAACATCACCCAGGTGCTAGAGAAAGCAGGGCAATTCACAACCTTCATCAAACTTCTCAAAGCCACACAAACAGCTGACAGACTCAACTCACAGCTCAACAACTCAAACCAAGGCCTAACCTTGTTTGCACCCACTGACAATGCATTCTCAAGCCTAAAAGCAGGAACACTAAACTCCATAAACTCACAAGACCAAATGCAGTTGGTGCAGTTCCACATCCTCCCCACTCTCTACTCCATCTCACAGTTCCAAACCGCCAGCAACCCTTTACACACACAAGCCGGGAACAGCGACGACGGAGAGTACCCTCTCAACGTGACCACCTCCGGGAACCAAGTCAATCTAACAACTGGGGTGGTTGACACAACAGTGTCCAACACTATATTCAGTGATAACCAGCTCGCGGTGTATCAGGTCGATAAGGTGCTTCTTCCTATGGCACTTTTTGGCTCGGCGGCTCCGGCGGCAGCACCGGCGGAGGCTCCGGCGCCCACCAAGCCGGAGAAGAATGTCCGAGCAGGGGCAGCTGATTCTCCATCAGGGTCTTCGGACTCGTCGGCTGATGCTTCGAGTGCGGTGAGTTTGAAAAGGAAGACAGTTGAAGTTGTTACCTTTGTTTTTGCAGTTATTGCCGTTTCTTGTTTCTGA 732 0.5055 MAKLFYFLLLLFIQTISAQVAPTPAGPTNITQVLEKAGQFTTFIKLLKATQTADRLNSQLNNSNQGLTLFAPTDNAFSSLKAGTLNSINSQDQMQLVQFHILPTLYSISQFQTASNPLHTQAGNSDDGEYPLNVTTSGNQVNLTTGVVDTTVSNTIFSDNQLAVYQVDKVLLPMALFGSAAPAAAPAEAPAPTKPEKNVRAGAADSPSGSSDSSADASSAVSLKRKTVEVVTFVFAVIAVSCF* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0404 243 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 11 6 239 - -
Vra3g0404 243 MobiDBLite consensus disorder prediction 185 217 - -
Vra3g0404 243 ProSiteProfiles FAS1/BIgH3 domain profile. 27 171 IPR000782 -
Vra3g0404 243 SMART fasc_3 68 174 IPR000782 -
Vra3g0404 243 Gene3D FAS1 domain 13 174 IPR036378 -
Vra3g0404 243 SUPERFAMILY FAS1 domain 26 173 IPR036378 -
Vra3g0404 243 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 6 239 IPR045003 -
Vra3g0404 243 Pfam Fasciclin domain 39 173 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0404 Vra-Chr3 4689572 4690701 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0404 - - pvu:PHAVU_001G176400g 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0404 3 4689572 4690701 Vra3g0404 3 4689572 4690701 ECH