Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0393 ATGGGTTCACTAGAAAGATCAAAGAAGAAGGTTCTTCTATGGAAGAAGGCCATGCTCCATTTTTCCCTGTGTTTTGTGATGGGCTTTTTCACTGGTTTAGCTCCAACAGGTAAATCTTCTCTCTTTTCCTCCAAAGTTGCTGTTTCAAATAGGACACAGTTTGCTCCACAACCTAGTGATATGTCACTCCTCACAACAAGTGTCAATGAAAGTTTCATAGCTCCACCTCCAATCACCATGTCCATGAAGCCTGCAATCCCTGAAACTGAAAAGAAAAAAACACCACCAAAGTTGAAGCCCAGAAGACTCATCATCATTGTGACTCCAACAAGCACAAAACTACCCCACCAGGCAGTGTTTTTGAGAAGGTTGGCAAATACCATAAAGCTTGTTCCTCAACCATTGCTGTGGATTGTTGTGGAAGCAAAAACAAATTCCACAGAGCTTCCTGAGATACTGAGAAAAACTGGCATCATGTATAGGCATGTGGTTTTCAAGGAAAACTTCACTGAATTAGAAGCTGAACTGAATCACCAGAGAAATCTTGCACTCAAGCACATTGAGCACCACAGACTCAACGGCATTGTGCACTTTGCTGGCCTTTCCAATGTCTATGATCTCCAATTCTTCCATCAGCTTAGAGATATTGAGTTGTTTGGAACATGGCCAACTGCATTGCTAGCTGCACACAGGAAAAAAGTGAAAATCGAAGGACCAGTTTGCGATTCATCACAAGTTATTGGTTGGCATCTGAGGAATATGAACAATGAAACTGACACAATCACTCCCCCAATTCATATTTCAAGTTTTGCATTTAACAGTTCCATCCTATGGGACCCTGAGCGATGGGGTCGCACTTCCTCTGTTCAAGACACTTCTCAGAATTCCATCAAATTCGTGAAGCAAGTAGTTCTAGAAGATGAAGCTAAGTTAAAGGGAATTCCACCACAAGACTGCTCCAAAATCTTGCTCTGGCGTTTCAATTTTCGAGCCCAAACCACCTCAATTCACTAA 1014 0.4211 MGSLERSKKKVLLWKKAMLHFSLCFVMGFFTGLAPTGKSSLFSSKVAVSNRTQFAPQPSDMSLLTTSVNESFIAPPPITMSMKPAIPETEKKKTPPKLKPRRLIIIVTPTSTKLPHQAVFLRRLANTIKLVPQPLLWIVVEAKTNSTELPEILRKTGIMYRHVVFKENFTELEAELNHQRNLALKHIEHHRLNGIVHFAGLSNVYDLQFFHQLRDIELFGTWPTALLAAHRKKVKIEGPVCDSSQVIGWHLRNMNNETDTITPPIHISSFAFNSSILWDPERWGRTSSVQDTSQNSIKFVKQVVLEDEAKLKGIPPQDCSKILLWRFNFRAQTTSIH* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0393 337 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 102 336 IPR029044 -
Vra3g0393 337 PANTHER BETA-1,4-XYLOSYLTRANSFERASE IRX9-RELATED 1 334 - -
Vra3g0393 337 CDD GlcAT-I 102 331 IPR005027 GO:0015018|GO:0016020
Vra3g0393 337 SUPERFAMILY Nucleotide-diphospho-sugar transferases 102 332 IPR029044 -
Vra3g0393 337 Pfam Glycosyltransferase family 43 124 328 IPR005027 GO:0015018|GO:0016020
Vra3g0393 337 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 1 334 IPR005027 GO:0015018|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0393 Vra-Chr3 4602401 4605087 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0393 1 333 Glycosyltransferase AT2G37090 60.571 5.81e-150 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0393 K20869 - gmx:100785607 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0393 3 4602401 4605087 Vra3g0393 3 4602401 4605087 ECH