Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0381 ATGAGAGATTTCGTGATCCTTGGCTCTTCTGTCACAACCCCTTTTCCTTCTTCTTCTTCTTCTTCTGCAGCACCCTATCGTTTCTCCATTAAACAGTCTATTCCAAAGCTCGCTCCTTTCTATTCCTCTTGGAACATTTCATGCGCCCTCCAAGCCCCCCTCTCTCTCAGCGCCGATTCCAAGCTCGTTGAGGAATTTGAAGTGTTCGATGAGGATGCCATTGATTCTGGGGTCGATGCTGAGGTTCTGGCCAAGATGGTTCTGTTAGGAATTCGAGGGAACAAGGTAAGGAGTGTTGTTCACACTCTCAACAGAGTGCAGGATCGCGCAGTTTCTCTAGCTTCTCATCTTAATGGCTCTTCGATTGATGCCATTGCGAAGGAGTGTTGCCGTTTGGTCACGTGCGGCCAAATTGAGGAGGCTGTTGAACTAATGGAGATTCTCACACGTTTCAAGATATCAATCAGGGGACTTGTTCAGCCGTCTGACGTAATTAAACGCTGTGTTCTTAGTCGGAACCCAATTCTAGCTGTTAGGTATGCATGTCTTCTTCCCCATGCACAGATATTGTTCTGCAGTATTATATCAGAATTTGGCAAAAGGAGGGATTTGATTTCTGCTTTGAAAACATATGAGCTATCGAAGAAACATGTGGATACTCCCAATATGTACATATACCGGGCAATAATTGATGCTTGTGGTCTATGTCGTGATTACATGAAATCTAGGTACATATATGAGGATTTGCTTAATCAGAAGATAACTCCAAATATATACGTTTTCAACAGCCTCATGAATGTGAATGCTCATGATCTTAGCTACACATTAAATCTATATCAAAATATGCAGAATCTTGGTTTAAAACCAGATATGACATCTTATAACATCCTACTGAAAGCATGCTGTGTTGCGGGAAGAGTTGATCTGGCTCAAGACATCTATAGGGAACTTAAGCATTTGGAATCAGTGGGACAGCTAAAATTAGATGTCTTTACCTACAGCACAATTATAAAGGTCTTCGCAGATGCGAGGTTATGGCAGATGGCTCTAACAATCAAGCAAGACATGCTTTCTGCTGGTGTTTCTCTTAATATTGTCGCATGGTCATCATTAATCAATGCCTGTGCACATACAGGGCTCGTAGAGCAGGCAATTCAGTTATTTGAAGAAATGCTTTTGGCTGGCTGCGAGCCTAATACTCAGTGTTTCAACATAATTTTAAATGCCTGTGTTGAAGCTTGCCAATATGACAGGGCTTTTCGCTTTTTCAATTCTTGGAAGGGAAACAAGATGTCAAGGTCATTTGGTGAAGACTGCAACAACAATATAGGGCAGGGACTTGTGCATAATGTTACTACTATGCCAAATGGCATTTCTAATTCACACATCTTGAATTTTGCTGAGAGGTTCCCTTTCACACCAACTACAACAACATACAATATTTTACTGAAGGCCTGTGGTACTGATTATTACCATGCAAAAGCATTAATCAAAGAGATGGAAACAGTAGGCCTTTCCCCTAATCAAATTAGCTGGTCAATTTTGATAGATATCTGTGGAGCATCAGCAAACGTGGAGGGTGCCATTGAGATTTTGAAGAACATGGCTGATGCTGGAATTAAACCTGATGTTATTGCATATACGACAGCCATTAAGGTTTGTGTTGAAAGTAAGAATTTTATGCAAGCATTAGCATTATATGAAGAAATGAAAAGCTACCAGATACGACCAAATTTGATAACATACAACACACTTCTGAAGGCCCGCAGTAAATATGGCTCCCTACATGAGGTGCAACAATGCTTGGCTATATACCAGGATATGCGAAAGGCAGGGTATAAACCCAATGACTGCTATCTGGAAGAATTGATTGAGGAATGGTGTGAAGGAGTGATACAAGATAACAGAGAGATGCAAGGAGAATTTTCTTTCAGCAATAAATCTGAATTAGAGAGATCCCAAAGTCTACTTCTTGAAAAAATTGCTGCTCACCTGCTAAAGAGGGTAGCTGACATCCTATCAATTGATGTTCAAGGTCTCACAAAGGTTGAAGCTCGTTTGGTTGTTCTTGCAGTTCTTCGGATGATCAAAGAGAATTACAGTTTAGGACATTCAATAAATGATGATATCTTGATCGTCATAGGAGCTACTAAAGTAGACGAAAATCCAAATAAACGCATATTAGAAGTGCAAGAGGCAATAATAAAACTTCTTAGAAACGAATTGGGGCTAGAAGTTTTTTCTGCCAGAACCAGATTAGCACTAAGTGACACACCAAAGTTAAAGCACCCCAACTTTGCAAATCTCAAAATAGGAGCACTACCAGGAGAGGATGCATTACCCACATTAACGGGGTTTCAGACCAGGAGACCTGGAATTCTAGTGAGGTTGAAGGTCACCAGAAAATCATTATACAGTTGGTTGCACAGGAAGTAA 2436 0.4068 MRDFVILGSSVTTPFPSSSSSSAAPYRFSIKQSIPKLAPFYSSWNISCALQAPLSLSADSKLVEEFEVFDEDAIDSGVDAEVLAKMVLLGIRGNKVRSVVHTLNRVQDRAVSLASHLNGSSIDAIAKECCRLVTCGQIEEAVELMEILTRFKISIRGLVQPSDVIKRCVLSRNPILAVRYACLLPHAQILFCSIISEFGKRRDLISALKTYELSKKHVDTPNMYIYRAIIDACGLCRDYMKSRYIYEDLLNQKITPNIYVFNSLMNVNAHDLSYTLNLYQNMQNLGLKPDMTSYNILLKACCVAGRVDLAQDIYRELKHLESVGQLKLDVFTYSTIIKVFADARLWQMALTIKQDMLSAGVSLNIVAWSSLINACAHTGLVEQAIQLFEEMLLAGCEPNTQCFNIILNACVEACQYDRAFRFFNSWKGNKMSRSFGEDCNNNIGQGLVHNVTTMPNGISNSHILNFAERFPFTPTTTTYNILLKACGTDYYHAKALIKEMETVGLSPNQISWSILIDICGASANVEGAIEILKNMADAGIKPDVIAYTTAIKVCVESKNFMQALALYEEMKSYQIRPNLITYNTLLKARSKYGSLHEVQQCLAIYQDMRKAGYKPNDCYLEELIEEWCEGVIQDNREMQGEFSFSNKSELERSQSLLLEKIAAHLLKRVADILSIDVQGLTKVEARLVVLAVLRMIKENYSLGHSINDDILIVIGATKVDENPNKRILEVQEAIIKLLRNELGLEVFSARTRLALSDTPKLKHPNFANLKIGALPGEDALPTLTGFQTRRPGILVRLKVTRKSLYSWLHRK* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0381 811 PANTHER OS03G0284900 PROTEIN 58 803 - -
Vra3g0381 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Vra3g0381 811 Gene3D Tetratricopeptide repeat domain 188 320 IPR011990 GO:0005515
Vra3g0381 811 Gene3D Tetratricopeptide repeat domain 321 456 IPR011990 GO:0005515
Vra3g0381 811 Gene3D Tetratricopeptide repeat domain 461 661 IPR011990 GO:0005515
Vra3g0381 811 Pfam Pentatricopeptide repeat domain 531 588 IPR002885 -
Vra3g0381 811 Pfam Pentacotripeptide-repeat region of PRORP 198 317 IPR033443 -
Vra3g0381 811 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 58 803 - -
Vra3g0381 811 Pfam PPR repeat family 364 411 IPR002885 -
Vra3g0381 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 543 577 IPR002885 -
Vra3g0381 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 578 615 IPR002885 -
Vra3g0381 811 Pfam PPR repeat 331 361 IPR002885 -
Vra3g0381 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Vra3g0381 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 320 IPR002885 -
Vra3g0381 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Vra3g0381 811 TIGRFAM PPR: pentatricopeptide repeat domain 402 431 IPR002885 -
Vra3g0381 811 TIGRFAM PPR: pentatricopeptide repeat domain 546 578 IPR002885 -
Vra3g0381 811 TIGRFAM PPR: pentatricopeptide repeat domain 366 400 IPR002885 -
Vra3g0381 811 TIGRFAM PPR: pentatricopeptide repeat domain 510 544 IPR002885 -
Vra3g0381 811 TIGRFAM PPR: pentatricopeptide repeat domain 293 318 IPR002885 -
Vra3g0381 811 TIGRFAM PPR: pentatricopeptide repeat domain 331 364 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0381 255 630 Glycosyltransferase AT1G05670 23.454 4.33e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0381 - - gmx:100794606 1341.64