Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0368 ATGCCTCGCCATGATGATAAATACAATACACGCCTGTACGTGGGACGCTTGTCCCACAATACCCGTTCCCGTGATCTGGAGCGTGCTTTCAGCAGATATGGAAGAGTTCGAGGTGTGGATATGAAGAACGATTTCGCCTTTGTTGAATTTAGTGATCCTCGAGATGCGGATGATGCCAGATTTAACTTGGATGGCCGTGACTTTGAAGGAAGTCGTATTATTGTTGAATTTGCTAAGGGGGGTCCTCGAGGTTCTCGTGAATACTTGGGTAGGGGTCCACCACCTGGATCTGGACGATGCTTTAACTGTGGCATTGATGGTCATTGGGCCAGAGATTGCAAAGCTGGGGATTGGAAGAACAAATGCTACCGCTGCGGGGAAAGAGGTCATATAGAGAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGTAGCAGCAGGCGTGGACGGAGTTTCTCACGATCACCAGTCAGATCATATTCTCCTCGTCGTGGGAGAAGCAGGGATCGGAGCTACAGTCGTGACCGCAGCTACAGTCGATCTAGATCTCCTGTCAGAAGAGCAAGAAGCCCAGTTTCTGAAGATAGGTCACGGAGTCCTCGACCGTCCAAGATAAGGGATCATAGTGCATCACCTGACCGTGGCAGCCCACAGAAGAAAAGTGACATATCTCCCCGTAATGATGATAGGATGGTGACACAGCGAGATGGGTCTGACTTCAGTGATGGTCCAAGAGGTAAAAGTAGAAGCCCTGCCAGCCCTCCAAGGAACAACAATGAGAGGGGGTATGATAGCCCCAAATCTAATGGTCGTAGCCGGAGCCCCAGCCGGAGCCCTAGGGATGACAGGAGCCCCATTGATGAAGATGATGACAACCACCGTCGCTCACAGTCACCACCTTAG 900 0.5056 MPRHDDKYNTRLYVGRLSHNTRSRDLERAFSRYGRVRGVDMKNDFAFVEFSDPRDADDARFNLDGRDFEGSRIIVEFAKGGPRGSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSSSRRGRSFSRSPVRSYSPRRGRSRDRSYSRDRSYSRSRSPVRRARSPVSEDRSRSPRPSKIRDHSASPDRGSPQKKSDISPRNDDRMVTQRDGSDFSDGPRGKSRSPASPPRNNNERGYDSPKSNGRSRSPSRSPRDDRSPIDEDDDNHRRSQSPP* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0368 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 80 IPR000504 GO:0003723
Vra3g0368 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 73 IPR000504 GO:0003723
Vra3g0368 299 PANTHER SPLICING FACTOR, PUTATIVE-RELATED 7 284 - -
Vra3g0368 299 MobiDBLite consensus disorder prediction 273 299 - -
Vra3g0368 299 MobiDBLite consensus disorder prediction 161 242 - -
Vra3g0368 299 Gene3D - 90 117 - -
Vra3g0368 299 Gene3D - 118 150 - -
Vra3g0368 299 SUPERFAMILY Retrovirus zinc finger-like domains 90 138 IPR036875 GO:0003676|GO:0008270
Vra3g0368 299 Gene3D - 3 88 IPR012677 -
Vra3g0368 299 ProSiteProfiles Zinc finger CCHC-type profile. 99 114 IPR001878 GO:0003676|GO:0008270
Vra3g0368 299 Pfam Zinc knuckle 99 114 IPR001878 GO:0003676|GO:0008270
Vra3g0368 299 Pfam Zinc knuckle 120 137 IPR001878 GO:0003676|GO:0008270
Vra3g0368 299 ProSiteProfiles Zinc finger CCHC-type profile. 121 137 IPR001878 GO:0003676|GO:0008270
Vra3g0368 299 SMART c2hcfinal6 121 137 IPR001878 GO:0003676|GO:0008270
Vra3g0368 299 SMART c2hcfinal6 99 115 IPR001878 GO:0003676|GO:0008270
Vra3g0368 299 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 7 284 - -
Vra3g0368 299 SUPERFAMILY RNA-binding domain, RBD 5 99 IPR035979 GO:0003676
Vra3g0368 299 MobiDBLite consensus disorder prediction 133 299 - -
Vra3g0368 299 SMART rrm1_1 11 76 IPR000504 GO:0003723
Vra3g0368 299 MobiDBLite consensus disorder prediction 250 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0368 Vra-Chr3 4390294 4393587 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0368 K12896 - gmx:100813237 434.876