Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0367 ATGCCTCGCTATGATGATAAATACAATACACGCCTGTACGTGGGACGCTTGTCTCACAATACCCGTTCCCGTGATCTGGAGCGTGCTTTCAGCAGATATGGAAGAGTTCGAGGTGTGGATATGAAGAACGATTTCGCCTTTGTTGAATTTAGTGATCCTCGAGATGCGGATGATGCCAGATTTAACTTGGATGGCCGTGACTTTGAAGGAAGTCGTATTATTGTTGAATTTGCTAAGGGGGGTCCTCGAGGTTCTCGTGAATACTTGGGTAGGGGTCCACCACCTGGATCTGGACGATGCTTTAACTGTGGCATTGATGGTCATTGGGCCAGAGATTGCAAAGCTGGGGATTGGAAGAACAAATGCTACCGCTGCGGGGAAAGAGGTCATATAGAGAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGCAGCAGGCGTGGGCGGAGTTTCTCACGATCACCAGTCAGGTCATATTCTCCTCGTCGTGGGAGAAGCAGGGATCGGAGCTACAGTCGTGACCGCAGCTACAGTCGATCTAGATCTCCTGTCAGAAGAGCAAGAAGCCCAGTTTCTGAAGATAGGTCACGGAGTCCTCGACCGTCCAAGATAAGGGATCATAGTGCATCACCTGACCGTGGCAGCCCACAGAAGAAAAGTGACATATCTCCCCGTAATGATGATAGGATGGTGACACAGCGAGATGGGTCTGACTTCAGTGATGGTCCAAGAGGTAAAAGTAGAAGCCCTGCCAGCCCTCCAAGGAACAACAATGAGAGGGGGTATGATAGCCCCAAATCTAATGGTCGTAGCCGGAGCCCCAGCCGGAGCCCTAGGGATGACAGGAGCCCCATTGATGAAGATGATGACAACCACCGTCGCTCGCAGTCACCACCTTAG 897 0.5072 MPRYDDKYNTRLYVGRLSHNTRSRDLERAFSRYGRVRGVDMKNDFAFVEFSDPRDADDARFNLDGRDFEGSRIIVEFAKGGPRGSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSSRRGRSFSRSPVRSYSPRRGRSRDRSYSRDRSYSRSRSPVRRARSPVSEDRSRSPRPSKIRDHSASPDRGSPQKKSDISPRNDDRMVTQRDGSDFSDGPRGKSRSPASPPRNNNERGYDSPKSNGRSRSPSRSPRDDRSPIDEDDDNHRRSQSPP* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0367 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 80 IPR000504 GO:0003723
Vra3g0367 298 Gene3D - 90 118 - -
Vra3g0367 298 Gene3D - 119 149 - -
Vra3g0367 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 73 IPR000504 GO:0003723
Vra3g0367 298 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 7 283 - -
Vra3g0367 298 Gene3D - 3 88 IPR012677 -
Vra3g0367 298 SUPERFAMILY Retrovirus zinc finger-like domains 90 138 IPR036875 GO:0003676|GO:0008270
Vra3g0367 298 MobiDBLite consensus disorder prediction 133 298 - -
Vra3g0367 298 PANTHER SPLICING FACTOR, PUTATIVE-RELATED 7 283 - -
Vra3g0367 298 ProSiteProfiles Zinc finger CCHC-type profile. 99 114 IPR001878 GO:0003676|GO:0008270
Vra3g0367 298 MobiDBLite consensus disorder prediction 160 241 - -
Vra3g0367 298 Pfam Zinc knuckle 99 114 IPR001878 GO:0003676|GO:0008270
Vra3g0367 298 Pfam Zinc knuckle 120 137 IPR001878 GO:0003676|GO:0008270
Vra3g0367 298 ProSiteProfiles Zinc finger CCHC-type profile. 121 137 IPR001878 GO:0003676|GO:0008270
Vra3g0367 298 SUPERFAMILY RNA-binding domain, RBD 5 99 IPR035979 GO:0003676
Vra3g0367 298 SMART c2hcfinal6 121 137 IPR001878 GO:0003676|GO:0008270
Vra3g0367 298 SMART c2hcfinal6 99 115 IPR001878 GO:0003676|GO:0008270
Vra3g0367 298 MobiDBLite consensus disorder prediction 249 271 - -
Vra3g0367 298 MobiDBLite consensus disorder prediction 272 298 - -
Vra3g0367 298 SMART rrm1_1 11 76 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0367 Vra-Chr3 4382372 4385706 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0367 K12896 - gmx:100813237 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0367 3 4382372 4385706 Vra3g0367 3 4382372 4385706 ECH