Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0359 AAAGGTATTAATTTACTAATTAAAAACATGAAAAATAATCATATGATTAATCCCACCCCCTCCACCACTCCCAGCTCCACCTTCTTCCTCTCTGCCTCTGGAAAGGCCCTCCTTCTCTCCAACTCCAACAAGCGCCCCGACACACCCCGCAAGAAGTATGTCAAGCAGGTCACGGGCCGCAACAACGACACCGAGCTCCACCTCGCCGCTCAGCGTGGAGACGTGGCCGCCGTCCGCCAAATCATCGACGAGATCGAATCCGTCTTAATGGGGACCTTCGAGTTTGACGCCGAGGTTGCCCACATCAAGTACGCCATCTTCAACGAGGTCAACGACCTCGGCGAAACAGCTCTCTTCACCGCCGCGGAAAAGGGACACCTCGACGTCGTCCGCGAGCTCCTCCCTCACTCCACCGCCGAATCTCTTTCCTCCAAAAACCGCTCCGGCTTTGACACTTTGCACATCGCCGCTAGCAAAGGTCATCTTGCGATTGTGCAGGTGCTACTAGAGCATGACCCTGGGTTGATTAAAACGTTTGCTCAGTCAAATACAACGCCTCTAATCTCTGCAGCTACACGAGGACACTCGGATGTTGTTGAAGAGTTGTTGTCTCGGGATCCTACTCAGTTGGAGATGACAAGAGCCAATGGAAAGAATGCTCTCCATTTAGCCGCACGGCAGGGGCATGTGGATGTTGTGAAGATACTGCTGCAGAAGGATCCACAACTTGCTCGAAGAACTGATAAGAAAGGACAAACTGCACTGCACATGGCTGTCAAAGGGATTAGTTGCGATGTGGTAAAGCTCATTTTGGTTGCCGATGCAGCCATTGTCATGCTCCCTGACAGGTTTGGCAACACTGCATTGCATGTAGCCACGAGGAAGAAGAGGGCAGAGATAGTGCAAGAGCTGTTACTTCTTCCTGACACCAATGTAAACACCTTGACAAGAGACCACAAGACAGCTCTCGACCTTGCTGAGGGGCTTCCCATAACTGAAGAAATTCTGGAGATCAAAGAGTGTCTGATTCGTTATGGCGCAGTTAAAGCCAATGATCTCAACCAACCAAGGGATGAGCTGAGGAAAACCATGACACAGATTAAGAAAGATGTCTATTTTCAGCTGGAACAGACTCGAAAAACAAACAGGAATGTGAGTGGGATTGAAAATGAGCTACGCAAGTTGCACAGGGCTGGAGTCAACAATGCTGGGAACTCAGTGACGGTGGTTGCTGTGCTATTTGCTGCGGTTGCATTCGCAGCACTTTTCACAGTTCCTGGTGGGGATTATGATAATGGGATGGCAGTGATGGTACATAGTGCACCATTCAAGGCCTTCTTCATATCTAATGCCTTGGCACTGTTTACATCATTGGCAGTGGTGCTGGTTCAAATCACCATTGTTAGAGGGGAGGTAAAGGCTGAGAGAAAGGTTGTGGAAGTAATCAACAAGATGATGTGGTTAGCCTCTGTATGCACTTCTGTTTCATACATTACAGCTTCTTATATAGTAGTTGGTCGGCACAGCAAGTGGGCTGCAATACTTGTTACAGTTATAGGGGGGATCATAATGTGTGGTGTTCTGGGTACCATGACATACTATGTGGTCAAATCCAAACGCTCCAGAAGAGAGAGGAAGAAAGAGAAGAAGTCTAAGAAAGAAGGAACGTTGCGTCTTTCAAATTCTGATGAGTCAGAAATAAATCCAATCTATGCCATTTGA 1722 0.482 KGINLLIKNMKNNHMINPTPSTTPSSTFFLSASGKALLLSNSNKRPDTPRKKYVKQVTGRNNDTELHLAAQRGDVAAVRQIIDEIESVLMGTFEFDAEVAHIKYAIFNEVNDLGETALFTAAEKGHLDVVRELLPHSTAESLSSKNRSGFDTLHIAASKGHLAIVQVLLEHDPGLIKTFAQSNTTPLISAATRGHSDVVEELLSRDPTQLEMTRANGKNALHLAARQGHVDVVKILLQKDPQLARRTDKKGQTALHMAVKGISCDVVKLILVADAAIVMLPDRFGNTALHVATRKKRAEIVQELLLLPDTNVNTLTRDHKTALDLAEGLPITEEILEIKECLIRYGAVKANDLNQPRDELRKTMTQIKKDVYFQLEQTRKTNRNVSGIENELRKLHRAGVNNAGNSVTVVAVLFAAVAFAALFTVPGGDYDNGMAVMVHSAPFKAFFISNALALFTSLAVVLVQITIVRGEVKAERKVVEVINKMMWLASVCTSVSYITASYIVVGRHSKWAAILVTVIGGIIMCGVLGTMTYYVVKSKRSRRERKKEKKSKKEGTLRLSNSDESEINPIYAI* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0359 573 Pfam Domain of unknown function 400 504 IPR026961 -
Vra3g0359 573 SMART ANK_2a 182 211 IPR002110 GO:0005515
Vra3g0359 573 SMART ANK_2a 284 314 IPR002110 GO:0005515
Vra3g0359 573 SMART ANK_2a 148 177 IPR002110 GO:0005515
Vra3g0359 573 SMART ANK_2a 113 144 IPR002110 GO:0005515
Vra3g0359 573 SMART ANK_2a 61 90 IPR002110 GO:0005515
Vra3g0359 573 SMART ANK_2a 216 245 IPR002110 GO:0005515
Vra3g0359 573 SMART ANK_2a 250 279 IPR002110 GO:0005515
Vra3g0359 573 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1 30 567 - -
Vra3g0359 573 Gene3D - 274 380 IPR036770 -
Vra3g0359 573 PANTHER CASKIN 30 567 - -
Vra3g0359 573 ProSiteProfiles Ankyrin repeat profile. 113 145 IPR002110 GO:0005515
Vra3g0359 573 ProSiteProfiles Ankyrin repeat region circular profile. 148 171 - -
Vra3g0359 573 ProSiteProfiles Ankyrin repeat profile. 216 248 IPR002110 GO:0005515
Vra3g0359 573 SUPERFAMILY Ankyrin repeat 66 346 IPR036770 -
Vra3g0359 573 Gene3D - 35 174 IPR036770 -
Vra3g0359 573 ProSiteProfiles Ankyrin repeat region circular profile. 216 239 - -
Vra3g0359 573 Pfam Ankyrin repeats (3 copies) 182 241 IPR002110 GO:0005515
Vra3g0359 573 Pfam Ankyrin repeats (3 copies) 248 313 IPR002110 GO:0005515
Vra3g0359 573 Pfam Ankyrin repeats (3 copies) 66 171 IPR002110 GO:0005515
Vra3g0359 573 ProSiteProfiles Ankyrin repeat profile. 284 317 IPR002110 GO:0005515
Vra3g0359 573 Gene3D - 175 273 IPR036770 -
Vra3g0359 573 ProSiteProfiles Ankyrin repeat profile. 148 171 IPR002110 GO:0005515
Vra3g0359 573 MobiDBLite consensus disorder prediction 544 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0359 Vra-Chr3 4309961 4314568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0359 1 573 Miscellaneous Gene Families AT3G12360 67.931 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0359 - - gmx:100779710 884.789