Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0341 ATGGTTGGTGTTATTTCGTTGGTAACTGGGATGATTGGTCCAAGTGGCTTTGGATCAGCTTCCACTGCAGAACAAGTTACAGAAGGAATCGATGCTGCCAACCTCACTGCAATTATCACAGGAGGAGCAAGTGGAATTGGGTTGGAGACAACACGAGTGTTGGCACTTCGGAAGGTTCATGTGATCATTGCAGTAAGAAACATGGTGTCTGCAAAAGAAGCTAAACAACGTATACTAGAAGAAAATGAGTCTGCACGAGTCGACATAATGAAGCTCGATCTGTGCTCTCTCAATTCTGTGACATCCTTTGTCGACAACTTCATAGCTCTTGATCTTCCTCTCAATATCTTAATAAACAATGCTGGAGTAATGTTCTGCCCCTTCGAACTCTCAGAGGATGGGATCGAGATGCAGTTTGCAACAAACCATCTTGGTCATTTCCTGTTGACAAACCTGCTTCTTGAAAAAATGAAGCAAACAGCACAAGCCACTGGAATAGAGGGCAGGATCATAAATCTGTCATCAATTGCCCATAACTACACTTACATAAAAGGGATTAGATTCAATAAAATCAATGAGCGAAAAGGTTATGGTAACAAGAAGGCTTATGGACAGTCCAAGTTAGCAAACATACTGCATACAAATGAGCTTTCTCGTCGCCTGCAGGAAGAGGGTGTGAACATCACAGCAAACTCAGTCCATCCAGGAGTAATAATGACACCTCTTATGAGACATTCTTCTTACCTTATGCACTTCTTGAAGATCTTCACCTTTTACATATGGAAGAACGTCCCTCAGGGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAACGTGAAAGGTGTAACTGGGAAGTACTTTGTGGATTGCAATCTATGCAAGCCAAGTGCGCATGCCAAAAACAAACATCTAGCAAAGAAACTCTGGGATTTCAGCAACGAGTTGATCAAATCGATTTTAAAAGTTTGA 972 0.4239 MVGVISLVTGMIGPSGFGSASTAEQVTEGIDAANLTAIITGGASGIGLETTRVLALRKVHVIIAVRNMVSAKEAKQRILEENESARVDIMKLDLCSLNSVTSFVDNFIALDLPLNILINNAGVMFCPFELSEDGIEMQFATNHLGHFLLTNLLLEKMKQTAQATGIEGRIINLSSIAHNYTYIKGIRFNKINERKGYGNKKAYGQSKLANILHTNELSRRLQEEGVNITANSVHPGVIMTPLMRHSSYLMHFLKIFTFYIWKNVPQGAATTCYVALHPNVKGVTGKYFVDCNLCKPSAHAKNKHLAKKLWDFSNELIKSILKV* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0341 323 Gene3D - 26 321 - -
Vra3g0341 323 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32, CHLOROPLASTIC-LIKE 5 320 - -
Vra3g0341 323 PANTHER RETINOL DEHYDROGENASE 5 320 - -
Vra3g0341 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 296 IPR036291 -
Vra3g0341 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Vra3g0341 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Vra3g0341 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Vra3g0341 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Vra3g0341 323 Pfam short chain dehydrogenase 36 184 IPR002347 -
Vra3g0341 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Vra3g0341 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Vra3g0341 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Vra3g0341 323 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Vra3g0341 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0341 Vra-Chr3 4083594 4086580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0341 35 244 Miscellaneous Gene Families AT2G29340 27.778 2.62e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0341 K11153 - gmx:100781156 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0341 3 4083594 4086580 Vra3g0341 3 4083594 4086580 ECH
Vra3g0341 3 4083594 4086580 Vra8g0990 8 22426755 22431921 PCT